Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2193

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2191 and EX28DRAFT_2192 overlap by 4 nucleotidesEX28DRAFT_2192 and EX28DRAFT_2193 overlap by 14 nucleotidesEX28DRAFT_2193 and EX28DRAFT_2194 are separated by 97 nucleotides EX28DRAFT_2191: EX28DRAFT_2191 - P pilus assembly protein, pilin FimA, at 2,213,752 to 2,214,747 _2191 EX28DRAFT_2192: EX28DRAFT_2192 - P pilus assembly protein, pilin FimA, at 2,214,744 to 2,215,247 _2192 EX28DRAFT_2193: EX28DRAFT_2193 - Rad3-related DNA helicases, at 2,215,234 to 2,217,411 _2193 EX28DRAFT_2194: EX28DRAFT_2194 - Superfamily II DNA and RNA helicases, at 2,217,509 to 2,218,894 _2194 Position (kb) 2215 2216 2217 2218Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2214.252 kb on + strand, within EX28DRAFT_2191at 2214.281 kb on + strand, within EX28DRAFT_2191at 2214.313 kb on + strand, within EX28DRAFT_2191at 2214.353 kb on + strand, within EX28DRAFT_2191at 2214.470 kb on + strand, within EX28DRAFT_2191at 2214.470 kb on + strand, within EX28DRAFT_2191at 2214.470 kb on + strand, within EX28DRAFT_2191at 2214.471 kb on - strand, within EX28DRAFT_2191at 2214.536 kb on + strand, within EX28DRAFT_2191at 2214.613 kb on + strand, within EX28DRAFT_2191at 2214.613 kb on + strand, within EX28DRAFT_2191at 2214.613 kb on + strand, within EX28DRAFT_2191at 2214.614 kb on - strand, within EX28DRAFT_2191at 2214.614 kb on - strand, within EX28DRAFT_2191at 2214.615 kb on + strand, within EX28DRAFT_2191at 2214.615 kb on + strand, within EX28DRAFT_2191at 2214.616 kb on - strand, within EX28DRAFT_2191at 2214.616 kb on - strand, within EX28DRAFT_2191at 2214.616 kb on - strand, within EX28DRAFT_2191at 2214.616 kb on - strand, within EX28DRAFT_2191at 2214.616 kb on - strand, within EX28DRAFT_2191at 2214.616 kb on - strand, within EX28DRAFT_2191at 2214.616 kb on - strand, within EX28DRAFT_2191at 2214.616 kb on - strand, within EX28DRAFT_2191at 2214.616 kb on - strand, within EX28DRAFT_2191at 2214.655 kb on + strandat 2214.656 kb on - strandat 2214.766 kb on + strandat 2214.851 kb on - strand, within EX28DRAFT_2192at 2214.917 kb on - strand, within EX28DRAFT_2192at 2214.950 kb on - strand, within EX28DRAFT_2192at 2214.950 kb on - strand, within EX28DRAFT_2192at 2214.950 kb on - strand, within EX28DRAFT_2192at 2215.016 kb on + strand, within EX28DRAFT_2192at 2215.017 kb on - strand, within EX28DRAFT_2192at 2215.239 kb on + strandat 2215.240 kb on - strandat 2215.579 kb on - strand, within EX28DRAFT_2193at 2215.736 kb on - strand, within EX28DRAFT_2193at 2215.736 kb on - strand, within EX28DRAFT_2193at 2216.691 kb on + strand, within EX28DRAFT_2193at 2216.810 kb on + strand, within EX28DRAFT_2193at 2216.913 kb on + strand, within EX28DRAFT_2193at 2216.913 kb on + strand, within EX28DRAFT_2193at 2216.914 kb on - strand, within EX28DRAFT_2193at 2216.914 kb on - strand, within EX28DRAFT_2193at 2216.914 kb on - strand, within EX28DRAFT_2193at 2216.914 kb on - strand, within EX28DRAFT_2193at 2216.965 kb on - strand, within EX28DRAFT_2193at 2217.368 kb on + strandat 2217.368 kb on + strandat 2217.368 kb on + strandat 2217.368 kb on + strandat 2217.369 kb on - strandat 2217.369 kb on - strandat 2217.369 kb on - strandat 2217.426 kb on + strandat 2217.432 kb on - strandat 2217.433 kb on + strandat 2217.434 kb on - strandat 2217.898 kb on + strand, within EX28DRAFT_2194at 2217.909 kb on + strand, within EX28DRAFT_2194at 2217.909 kb on + strand, within EX28DRAFT_2194at 2218.165 kb on + strand, within EX28DRAFT_2194at 2218.166 kb on - strand, within EX28DRAFT_2194

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,214,252 + EX28DRAFT_2191 0.50 -0.2
2,214,281 + EX28DRAFT_2191 0.53 +0.2
2,214,313 + EX28DRAFT_2191 0.56 +0.2
2,214,353 + EX28DRAFT_2191 0.60 -0.1
2,214,470 + EX28DRAFT_2191 0.72 -0.5
2,214,470 + EX28DRAFT_2191 0.72 -0.1
2,214,470 + EX28DRAFT_2191 0.72 +0.3
2,214,471 - EX28DRAFT_2191 0.72 -0.7
2,214,536 + EX28DRAFT_2191 0.79 +1.6
2,214,613 + EX28DRAFT_2191 0.86 +0.6
2,214,613 + EX28DRAFT_2191 0.86 -3.1
2,214,613 + EX28DRAFT_2191 0.86 -0.0
2,214,614 - EX28DRAFT_2191 0.87 +0.3
2,214,614 - EX28DRAFT_2191 0.87 +0.3
2,214,615 + EX28DRAFT_2191 0.87 +2.8
2,214,615 + EX28DRAFT_2191 0.87 -0.6
2,214,616 - EX28DRAFT_2191 0.87 +0.1
2,214,616 - EX28DRAFT_2191 0.87 +0.1
2,214,616 - EX28DRAFT_2191 0.87 -0.0
2,214,616 - EX28DRAFT_2191 0.87 -1.0
2,214,616 - EX28DRAFT_2191 0.87 +1.5
2,214,616 - EX28DRAFT_2191 0.87 -2.0
2,214,616 - EX28DRAFT_2191 0.87 -0.1
2,214,616 - EX28DRAFT_2191 0.87 +0.8
2,214,616 - EX28DRAFT_2191 0.87 -1.5
2,214,655 + -0.5
2,214,656 - +0.7
2,214,766 + +3.4
2,214,851 - EX28DRAFT_2192 0.21 +0.2
2,214,917 - EX28DRAFT_2192 0.34 +0.9
2,214,950 - EX28DRAFT_2192 0.41 -0.2
2,214,950 - EX28DRAFT_2192 0.41 -0.3
2,214,950 - EX28DRAFT_2192 0.41 +0.3
2,215,016 + EX28DRAFT_2192 0.54 +1.6
2,215,017 - EX28DRAFT_2192 0.54 -1.4
2,215,239 + -0.2
2,215,240 - +0.1
2,215,579 - EX28DRAFT_2193 0.16 +0.3
2,215,736 - EX28DRAFT_2193 0.23 +0.1
2,215,736 - EX28DRAFT_2193 0.23 +0.7
2,216,691 + EX28DRAFT_2193 0.67 +2.2
2,216,810 + EX28DRAFT_2193 0.72 -0.2
2,216,913 + EX28DRAFT_2193 0.77 +1.5
2,216,913 + EX28DRAFT_2193 0.77 -0.5
2,216,914 - EX28DRAFT_2193 0.77 +0.2
2,216,914 - EX28DRAFT_2193 0.77 -0.2
2,216,914 - EX28DRAFT_2193 0.77 -0.3
2,216,914 - EX28DRAFT_2193 0.77 +0.3
2,216,965 - EX28DRAFT_2193 0.79 +0.3
2,217,368 + -1.4
2,217,368 + -0.5
2,217,368 + -1.3
2,217,368 + -0.1
2,217,369 - -0.1
2,217,369 - -1.1
2,217,369 - -1.1
2,217,426 + -1.4
2,217,432 - +0.3
2,217,433 + +0.0
2,217,434 - +1.0
2,217,898 + EX28DRAFT_2194 0.28 -1.4
2,217,909 + EX28DRAFT_2194 0.29 +0.5
2,217,909 + EX28DRAFT_2194 0.29 -0.1
2,218,165 + EX28DRAFT_2194 0.47 +0.4
2,218,166 - EX28DRAFT_2194 0.47 -0.9

Or see this region's nucleotide sequence