Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2177 and EX28DRAFT_2178 are separated by 116 nucleotides EX28DRAFT_2178 and EX28DRAFT_2179 are separated by 310 nucleotides EX28DRAFT_2179 and EX28DRAFT_2180 are separated by 84 nucleotides EX28DRAFT_2180 and EX28DRAFT_2181 overlap by 4 nucleotides
EX28DRAFT_2177: EX28DRAFT_2177 - Bacterial PH domain/Short C-terminal domain, at 2,200,483 to 2,200,983
_2177
EX28DRAFT_2178: EX28DRAFT_2178 - hypothetical protein, at 2,201,100 to 2,201,282
_2178
EX28DRAFT_2179: EX28DRAFT_2179 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,201,593 to 2,202,336
_2179
EX28DRAFT_2180: EX28DRAFT_2180 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 2,202,421 to 2,203,080
_2180
EX28DRAFT_2181: EX28DRAFT_2181 - ABC-type polar amino acid transport system, ATPase component, at 2,203,077 to 2,203,799
_2181
Position (kb)
2201
2202
2203 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2200.646 kb on - strand, within EX28DRAFT_2177 at 2200.646 kb on - strand, within EX28DRAFT_2177 at 2200.650 kb on + strand, within EX28DRAFT_2177 at 2200.749 kb on + strand, within EX28DRAFT_2177 at 2200.750 kb on - strand, within EX28DRAFT_2177 at 2200.885 kb on + strand, within EX28DRAFT_2177 at 2200.967 kb on + strand at 2200.968 kb on - strand at 2201.061 kb on - strand at 2201.111 kb on + strand at 2201.182 kb on + strand, within EX28DRAFT_2178 at 2201.182 kb on + strand, within EX28DRAFT_2178 at 2201.182 kb on + strand, within EX28DRAFT_2178 at 2201.182 kb on + strand, within EX28DRAFT_2178 at 2201.183 kb on - strand, within EX28DRAFT_2178 at 2201.188 kb on + strand, within EX28DRAFT_2178 at 2201.284 kb on + strand at 2201.284 kb on + strand at 2201.284 kb on + strand at 2201.284 kb on + strand at 2201.285 kb on - strand at 2201.331 kb on + strand at 2201.332 kb on - strand at 2201.392 kb on + strand at 2201.392 kb on + strand at 2201.393 kb on - strand at 2201.393 kb on - strand at 2201.472 kb on - strand at 2201.579 kb on + strand at 2201.592 kb on + strand at 2201.592 kb on + strand at 2201.592 kb on + strand at 2201.593 kb on - strand at 2201.606 kb on + strand at 2201.607 kb on - strand at 2201.628 kb on + strand at 2201.629 kb on - strand at 2201.629 kb on - strand at 2201.721 kb on + strand, within EX28DRAFT_2179 at 2201.721 kb on + strand, within EX28DRAFT_2179 at 2201.722 kb on - strand, within EX28DRAFT_2179 at 2201.725 kb on + strand, within EX28DRAFT_2179 at 2201.725 kb on + strand, within EX28DRAFT_2179 at 2201.725 kb on + strand, within EX28DRAFT_2179 at 2201.726 kb on - strand, within EX28DRAFT_2179 at 2201.726 kb on - strand, within EX28DRAFT_2179 at 2201.726 kb on - strand, within EX28DRAFT_2179 at 2201.782 kb on + strand, within EX28DRAFT_2179 at 2201.782 kb on + strand, within EX28DRAFT_2179 at 2201.783 kb on - strand, within EX28DRAFT_2179 at 2201.833 kb on - strand, within EX28DRAFT_2179 at 2201.950 kb on - strand, within EX28DRAFT_2179 at 2202.037 kb on - strand, within EX28DRAFT_2179 at 2202.037 kb on - strand, within EX28DRAFT_2179 at 2202.082 kb on + strand, within EX28DRAFT_2179 at 2202.082 kb on + strand, within EX28DRAFT_2179 at 2202.083 kb on - strand, within EX28DRAFT_2179 at 2202.142 kb on + strand, within EX28DRAFT_2179 at 2202.209 kb on - strand, within EX28DRAFT_2179 at 2202.292 kb on + strand at 2202.293 kb on - strand at 2202.305 kb on - strand at 2202.330 kb on + strand at 2202.331 kb on - strand at 2202.345 kb on - strand at 2202.406 kb on + strand at 2202.418 kb on - strand at 2202.418 kb on - strand at 2202.459 kb on + strand at 2202.459 kb on + strand at 2202.459 kb on + strand at 2202.460 kb on - strand at 2202.478 kb on - strand at 2202.712 kb on - strand, within EX28DRAFT_2180 at 2202.730 kb on + strand, within EX28DRAFT_2180 at 2202.731 kb on - strand, within EX28DRAFT_2180 at 2202.731 kb on - strand, within EX28DRAFT_2180 at 2202.731 kb on - strand, within EX28DRAFT_2180 at 2202.731 kb on - strand, within EX28DRAFT_2180 at 2202.898 kb on - strand, within EX28DRAFT_2180 at 2202.898 kb on - strand, within EX28DRAFT_2180 at 2202.904 kb on - strand, within EX28DRAFT_2180 at 2202.904 kb on - strand, within EX28DRAFT_2180 at 2203.012 kb on + strand, within EX28DRAFT_2180 at 2203.163 kb on - strand, within EX28DRAFT_2181 at 2203.193 kb on + strand, within EX28DRAFT_2181 at 2203.271 kb on - strand, within EX28DRAFT_2181 at 2203.271 kb on - strand, within EX28DRAFT_2181 at 2203.271 kb on - strand, within EX28DRAFT_2181 at 2203.335 kb on + strand, within EX28DRAFT_2181
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,200,646 - EX28DRAFT_2177 0.33 +0.3 2,200,646 - EX28DRAFT_2177 0.33 +0.3 2,200,650 + EX28DRAFT_2177 0.33 -0.1 2,200,749 + EX28DRAFT_2177 0.53 -4.3 2,200,750 - EX28DRAFT_2177 0.53 -0.1 2,200,885 + EX28DRAFT_2177 0.80 -0.0 2,200,967 + +0.4 2,200,968 - -0.6 2,201,061 - +0.1 2,201,111 + +0.8 2,201,182 + EX28DRAFT_2178 0.45 +0.3 2,201,182 + EX28DRAFT_2178 0.45 -0.1 2,201,182 + EX28DRAFT_2178 0.45 +0.1 2,201,182 + EX28DRAFT_2178 0.45 -1.0 2,201,183 - EX28DRAFT_2178 0.45 +0.7 2,201,188 + EX28DRAFT_2178 0.48 +0.1 2,201,284 + -0.2 2,201,284 + -0.5 2,201,284 + +0.1 2,201,284 + +0.4 2,201,285 - +0.9 2,201,331 + +0.3 2,201,332 - +0.3 2,201,392 + -0.2 2,201,392 + -0.2 2,201,393 - -0.5 2,201,393 - +0.3 2,201,472 - +0.3 2,201,579 + +0.7 2,201,592 + +2.0 2,201,592 + +0.3 2,201,592 + +0.7 2,201,593 - +0.4 2,201,606 + -0.1 2,201,607 - -0.1 2,201,628 + +1.1 2,201,629 - +1.2 2,201,629 - +0.4 2,201,721 + EX28DRAFT_2179 0.17 +0.6 2,201,721 + EX28DRAFT_2179 0.17 +0.4 2,201,722 - EX28DRAFT_2179 0.17 -0.1 2,201,725 + EX28DRAFT_2179 0.18 -2.0 2,201,725 + EX28DRAFT_2179 0.18 +0.2 2,201,725 + EX28DRAFT_2179 0.18 -0.3 2,201,726 - EX28DRAFT_2179 0.18 -0.7 2,201,726 - EX28DRAFT_2179 0.18 +0.1 2,201,726 - EX28DRAFT_2179 0.18 +0.1 2,201,782 + EX28DRAFT_2179 0.25 -0.2 2,201,782 + EX28DRAFT_2179 0.25 -0.5 2,201,783 - EX28DRAFT_2179 0.26 +0.2 2,201,833 - EX28DRAFT_2179 0.32 +2.1 2,201,950 - EX28DRAFT_2179 0.48 -0.5 2,202,037 - EX28DRAFT_2179 0.60 +0.8 2,202,037 - EX28DRAFT_2179 0.60 -0.3 2,202,082 + EX28DRAFT_2179 0.66 -0.1 2,202,082 + EX28DRAFT_2179 0.66 -1.6 2,202,083 - EX28DRAFT_2179 0.66 -0.4 2,202,142 + EX28DRAFT_2179 0.74 -0.8 2,202,209 - EX28DRAFT_2179 0.83 +0.4 2,202,292 + +0.1 2,202,293 - -0.0 2,202,305 - -0.6 2,202,330 + -2.1 2,202,331 - -0.6 2,202,345 - +0.1 2,202,406 + -0.0 2,202,418 - +0.4 2,202,418 - +0.0 2,202,459 + -1.2 2,202,459 + -0.1 2,202,459 + -0.5 2,202,460 - +0.6 2,202,478 - +0.6 2,202,712 - EX28DRAFT_2180 0.44 +0.3 2,202,730 + EX28DRAFT_2180 0.47 -0.8 2,202,731 - EX28DRAFT_2180 0.47 +0.4 2,202,731 - EX28DRAFT_2180 0.47 -0.7 2,202,731 - EX28DRAFT_2180 0.47 -0.7 2,202,731 - EX28DRAFT_2180 0.47 +0.6 2,202,898 - EX28DRAFT_2180 0.72 -0.8 2,202,898 - EX28DRAFT_2180 0.72 -1.1 2,202,904 - EX28DRAFT_2180 0.73 -0.7 2,202,904 - EX28DRAFT_2180 0.73 +1.1 2,203,012 + EX28DRAFT_2180 0.90 -0.4 2,203,163 - EX28DRAFT_2181 0.12 -1.6 2,203,193 + EX28DRAFT_2181 0.16 -0.1 2,203,271 - EX28DRAFT_2181 0.27 -0.1 2,203,271 - EX28DRAFT_2181 0.27 +0.5 2,203,271 - EX28DRAFT_2181 0.27 +0.2 2,203,335 + EX28DRAFT_2181 0.36 -0.4
Or see this region's nucleotide sequence