Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2171 and EX28DRAFT_2172 are separated by 144 nucleotides EX28DRAFT_2172 and EX28DRAFT_2173 are separated by 354 nucleotides
EX28DRAFT_2171: EX28DRAFT_2171 - Predicted membrane-associated, metal-dependent hydrolase, at 2,194,682 to 2,196,265
_2171
EX28DRAFT_2172: EX28DRAFT_2172 - Opacity protein and related surface antigens, at 2,196,410 to 2,196,928
_2172
EX28DRAFT_2173: EX28DRAFT_2173 - Predicted permease, DMT superfamily, at 2,197,283 to 2,198,170
_2173
Position (kb)
2196
2197 Strain fitness (log2 ratio)
-1
0
1
2 at 2195.444 kb on + strand, within EX28DRAFT_2171 at 2195.444 kb on + strand, within EX28DRAFT_2171 at 2195.445 kb on - strand, within EX28DRAFT_2171 at 2195.519 kb on + strand, within EX28DRAFT_2171 at 2195.846 kb on + strand, within EX28DRAFT_2171 at 2195.846 kb on + strand, within EX28DRAFT_2171 at 2195.852 kb on + strand, within EX28DRAFT_2171 at 2195.857 kb on + strand, within EX28DRAFT_2171 at 2195.858 kb on - strand, within EX28DRAFT_2171 at 2195.891 kb on + strand, within EX28DRAFT_2171 at 2195.901 kb on + strand, within EX28DRAFT_2171 at 2195.902 kb on - strand, within EX28DRAFT_2171 at 2196.052 kb on + strand, within EX28DRAFT_2171 at 2196.052 kb on + strand, within EX28DRAFT_2171 at 2196.053 kb on - strand, within EX28DRAFT_2171 at 2196.188 kb on + strand at 2196.188 kb on + strand at 2196.189 kb on - strand at 2196.221 kb on + strand at 2196.222 kb on - strand at 2196.253 kb on + strand at 2196.259 kb on + strand at 2196.259 kb on + strand at 2196.260 kb on - strand at 2196.260 kb on - strand at 2196.478 kb on - strand, within EX28DRAFT_2172 at 2196.598 kb on + strand, within EX28DRAFT_2172 at 2196.615 kb on - strand, within EX28DRAFT_2172 at 2196.615 kb on - strand, within EX28DRAFT_2172 at 2196.615 kb on - strand, within EX28DRAFT_2172 at 2196.624 kb on + strand, within EX28DRAFT_2172 at 2196.625 kb on - strand, within EX28DRAFT_2172 at 2196.676 kb on - strand, within EX28DRAFT_2172 at 2196.679 kb on - strand, within EX28DRAFT_2172 at 2196.679 kb on - strand, within EX28DRAFT_2172 at 2196.693 kb on + strand, within EX28DRAFT_2172 at 2196.726 kb on + strand, within EX28DRAFT_2172 at 2196.726 kb on + strand, within EX28DRAFT_2172 at 2196.726 kb on + strand, within EX28DRAFT_2172 at 2196.727 kb on - strand, within EX28DRAFT_2172 at 2196.761 kb on - strand, within EX28DRAFT_2172 at 2196.772 kb on - strand, within EX28DRAFT_2172 at 2196.778 kb on - strand, within EX28DRAFT_2172 at 2196.778 kb on - strand, within EX28DRAFT_2172 at 2196.778 kb on - strand, within EX28DRAFT_2172 at 2196.845 kb on - strand, within EX28DRAFT_2172 at 2196.851 kb on - strand, within EX28DRAFT_2172 at 2196.851 kb on - strand, within EX28DRAFT_2172 at 2196.851 kb on - strand, within EX28DRAFT_2172 at 2196.864 kb on - strand, within EX28DRAFT_2172 at 2196.928 kb on + strand at 2197.089 kb on - strand at 2197.089 kb on - strand at 2197.227 kb on + strand at 2197.264 kb on + strand at 2197.264 kb on + strand at 2197.265 kb on - strand at 2197.511 kb on + strand, within EX28DRAFT_2173 at 2197.539 kb on - strand, within EX28DRAFT_2173 at 2197.547 kb on + strand, within EX28DRAFT_2173 at 2197.547 kb on + strand, within EX28DRAFT_2173 at 2197.548 kb on - strand, within EX28DRAFT_2173 at 2197.548 kb on - strand, within EX28DRAFT_2173 at 2197.649 kb on - strand, within EX28DRAFT_2173 at 2197.678 kb on - strand, within EX28DRAFT_2173 at 2197.769 kb on + strand, within EX28DRAFT_2173 at 2197.769 kb on + strand, within EX28DRAFT_2173 at 2197.769 kb on + strand, within EX28DRAFT_2173 at 2197.770 kb on - strand, within EX28DRAFT_2173 at 2197.771 kb on + strand, within EX28DRAFT_2173 at 2197.771 kb on + strand, within EX28DRAFT_2173 at 2197.772 kb on - strand, within EX28DRAFT_2173 at 2197.773 kb on + strand, within EX28DRAFT_2173 at 2197.774 kb on - strand, within EX28DRAFT_2173 at 2197.774 kb on - strand, within EX28DRAFT_2173
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,195,444 + EX28DRAFT_2171 0.48 -0.3 2,195,444 + EX28DRAFT_2171 0.48 +1.1 2,195,445 - EX28DRAFT_2171 0.48 +0.9 2,195,519 + EX28DRAFT_2171 0.53 +0.4 2,195,846 + EX28DRAFT_2171 0.73 +0.7 2,195,846 + EX28DRAFT_2171 0.73 +0.2 2,195,852 + EX28DRAFT_2171 0.74 -0.2 2,195,857 + EX28DRAFT_2171 0.74 +0.7 2,195,858 - EX28DRAFT_2171 0.74 +0.4 2,195,891 + EX28DRAFT_2171 0.76 +0.7 2,195,901 + EX28DRAFT_2171 0.77 +0.4 2,195,902 - EX28DRAFT_2171 0.77 +0.6 2,196,052 + EX28DRAFT_2171 0.86 -0.4 2,196,052 + EX28DRAFT_2171 0.86 +0.6 2,196,053 - EX28DRAFT_2171 0.87 +0.5 2,196,188 + +0.8 2,196,188 + +0.5 2,196,189 - +0.5 2,196,221 + +0.7 2,196,222 - +0.6 2,196,253 + +0.7 2,196,259 + +0.2 2,196,259 + +0.2 2,196,260 - +0.6 2,196,260 - +0.8 2,196,478 - EX28DRAFT_2172 0.13 +0.1 2,196,598 + EX28DRAFT_2172 0.36 -0.6 2,196,615 - EX28DRAFT_2172 0.39 +0.5 2,196,615 - EX28DRAFT_2172 0.39 +0.1 2,196,615 - EX28DRAFT_2172 0.39 +0.7 2,196,624 + EX28DRAFT_2172 0.41 -0.5 2,196,625 - EX28DRAFT_2172 0.41 +0.1 2,196,676 - EX28DRAFT_2172 0.51 -0.1 2,196,679 - EX28DRAFT_2172 0.52 +0.4 2,196,679 - EX28DRAFT_2172 0.52 +0.1 2,196,693 + EX28DRAFT_2172 0.55 +2.1 2,196,726 + EX28DRAFT_2172 0.61 -1.2 2,196,726 + EX28DRAFT_2172 0.61 +0.2 2,196,726 + EX28DRAFT_2172 0.61 +1.1 2,196,727 - EX28DRAFT_2172 0.61 -0.2 2,196,761 - EX28DRAFT_2172 0.68 -0.2 2,196,772 - EX28DRAFT_2172 0.70 -0.4 2,196,778 - EX28DRAFT_2172 0.71 +0.5 2,196,778 - EX28DRAFT_2172 0.71 -0.5 2,196,778 - EX28DRAFT_2172 0.71 +0.1 2,196,845 - EX28DRAFT_2172 0.84 +0.4 2,196,851 - EX28DRAFT_2172 0.85 +0.7 2,196,851 - EX28DRAFT_2172 0.85 +0.1 2,196,851 - EX28DRAFT_2172 0.85 +0.6 2,196,864 - EX28DRAFT_2172 0.87 +0.5 2,196,928 + +0.1 2,197,089 - -0.1 2,197,089 - +0.4 2,197,227 + +0.1 2,197,264 + +0.8 2,197,264 + -0.8 2,197,265 - +0.5 2,197,511 + EX28DRAFT_2173 0.26 -0.0 2,197,539 - EX28DRAFT_2173 0.29 +1.8 2,197,547 + EX28DRAFT_2173 0.30 +0.3 2,197,547 + EX28DRAFT_2173 0.30 -0.4 2,197,548 - EX28DRAFT_2173 0.30 -0.7 2,197,548 - EX28DRAFT_2173 0.30 +1.6 2,197,649 - EX28DRAFT_2173 0.41 -0.9 2,197,678 - EX28DRAFT_2173 0.44 +0.4 2,197,769 + EX28DRAFT_2173 0.55 +0.2 2,197,769 + EX28DRAFT_2173 0.55 -1.5 2,197,769 + EX28DRAFT_2173 0.55 -0.0 2,197,770 - EX28DRAFT_2173 0.55 +0.0 2,197,771 + EX28DRAFT_2173 0.55 -0.1 2,197,771 + EX28DRAFT_2173 0.55 +0.3 2,197,772 - EX28DRAFT_2173 0.55 +0.1 2,197,773 + EX28DRAFT_2173 0.55 -1.6 2,197,774 - EX28DRAFT_2173 0.55 +1.7 2,197,774 - EX28DRAFT_2173 0.55 +0.6
Or see this region's nucleotide sequence