Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2164 and EX28DRAFT_2165 are separated by 102 nucleotides EX28DRAFT_2165 and EX28DRAFT_2166 overlap by 1 nucleotides
EX28DRAFT_2164: EX28DRAFT_2164 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 2,187,077 to 2,188,117
_2164
EX28DRAFT_2165: EX28DRAFT_2165 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,188,220 to 2,189,743
_2165
EX28DRAFT_2166: EX28DRAFT_2166 - drug resistance transporter, EmrB/QacA subfamily, at 2,189,743 to 2,191,314
_2166
Position (kb)
2188
2189
2190 Strain fitness (log2 ratio)
-2
-1
0
1 at 2187.547 kb on - strand, within EX28DRAFT_2164 at 2187.547 kb on - strand, within EX28DRAFT_2164 at 2187.547 kb on - strand, within EX28DRAFT_2164 at 2187.549 kb on + strand, within EX28DRAFT_2164 at 2187.550 kb on - strand, within EX28DRAFT_2164 at 2187.646 kb on - strand, within EX28DRAFT_2164 at 2188.065 kb on - strand at 2188.117 kb on + strand at 2188.117 kb on + strand at 2188.118 kb on - strand at 2188.122 kb on + strand at 2188.155 kb on + strand at 2188.155 kb on + strand at 2188.155 kb on + strand at 2188.155 kb on + strand at 2188.155 kb on + strand at 2188.155 kb on + strand at 2188.155 kb on + strand at 2188.156 kb on - strand at 2188.156 kb on - strand at 2188.157 kb on + strand at 2188.158 kb on - strand at 2188.252 kb on - strand at 2188.306 kb on - strand at 2188.733 kb on - strand, within EX28DRAFT_2165 at 2189.348 kb on - strand, within EX28DRAFT_2165 at 2189.350 kb on + strand, within EX28DRAFT_2165 at 2189.464 kb on + strand, within EX28DRAFT_2165 at 2189.465 kb on - strand, within EX28DRAFT_2165 at 2189.673 kb on + strand at 2189.673 kb on + strand at 2189.674 kb on - strand at 2189.711 kb on + strand at 2189.727 kb on - strand at 2189.727 kb on - strand at 2189.846 kb on + strand at 2189.883 kb on - strand at 2189.883 kb on - strand at 2190.139 kb on - strand, within EX28DRAFT_2166 at 2190.273 kb on + strand, within EX28DRAFT_2166 at 2190.444 kb on - strand, within EX28DRAFT_2166 at 2190.537 kb on - strand, within EX28DRAFT_2166 at 2190.608 kb on + strand, within EX28DRAFT_2166 at 2190.718 kb on - strand, within EX28DRAFT_2166
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,187,547 - EX28DRAFT_2164 0.45 +1.0 2,187,547 - EX28DRAFT_2164 0.45 -0.5 2,187,547 - EX28DRAFT_2164 0.45 +1.2 2,187,549 + EX28DRAFT_2164 0.45 +0.5 2,187,550 - EX28DRAFT_2164 0.45 -1.0 2,187,646 - EX28DRAFT_2164 0.55 +0.3 2,188,065 - -0.2 2,188,117 + -0.9 2,188,117 + -0.9 2,188,118 - -0.1 2,188,122 + -0.7 2,188,155 + -0.4 2,188,155 + +0.3 2,188,155 + -1.0 2,188,155 + -0.4 2,188,155 + -0.4 2,188,155 + -0.2 2,188,155 + -0.6 2,188,156 - -0.2 2,188,156 - +0.1 2,188,157 + -0.4 2,188,158 - -0.2 2,188,252 - +0.2 2,188,306 - -2.2 2,188,733 - EX28DRAFT_2165 0.34 -0.3 2,189,348 - EX28DRAFT_2165 0.74 -1.7 2,189,350 + EX28DRAFT_2165 0.74 +0.2 2,189,464 + EX28DRAFT_2165 0.82 +0.1 2,189,465 - EX28DRAFT_2165 0.82 -0.8 2,189,673 + -0.1 2,189,673 + +0.6 2,189,674 - +0.3 2,189,711 + +0.4 2,189,727 - -0.1 2,189,727 - +0.1 2,189,846 + +0.2 2,189,883 - -0.7 2,189,883 - -0.2 2,190,139 - EX28DRAFT_2166 0.25 -0.5 2,190,273 + EX28DRAFT_2166 0.34 -1.1 2,190,444 - EX28DRAFT_2166 0.45 +0.1 2,190,537 - EX28DRAFT_2166 0.51 -0.0 2,190,608 + EX28DRAFT_2166 0.55 +0.2 2,190,718 - EX28DRAFT_2166 0.62 +0.5
Or see this region's nucleotide sequence