Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2160 and EX28DRAFT_2161 are separated by 67 nucleotides EX28DRAFT_2161 and EX28DRAFT_2162 are separated by 300 nucleotides EX28DRAFT_2162 and EX28DRAFT_2163 are separated by 119 nucleotides EX28DRAFT_2163 and EX28DRAFT_2164 are separated by 210 nucleotides
EX28DRAFT_2160: EX28DRAFT_2160 - P pilus assembly protein, pilin FimA, at 2,184,407 to 2,184,967
_2160
EX28DRAFT_2161: EX28DRAFT_2161 - P pilus assembly protein, pilin FimA, at 2,185,035 to 2,185,556
_2161
EX28DRAFT_2162: EX28DRAFT_2162 - hypothetical protein, at 2,185,857 to 2,186,108
_2162
EX28DRAFT_2163: EX28DRAFT_2163 - hypothetical protein, at 2,186,228 to 2,186,866
_2163
EX28DRAFT_2164: EX28DRAFT_2164 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 2,187,077 to 2,188,117
_2164
Position (kb)
2185
2186
2187 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2184.932 kb on + strand at 2185.114 kb on + strand, within EX28DRAFT_2161 at 2185.114 kb on + strand, within EX28DRAFT_2161 at 2185.115 kb on - strand, within EX28DRAFT_2161 at 2185.115 kb on - strand, within EX28DRAFT_2161 at 2185.172 kb on + strand, within EX28DRAFT_2161 at 2185.191 kb on - strand, within EX28DRAFT_2161 at 2185.448 kb on + strand, within EX28DRAFT_2161 at 2185.524 kb on - strand at 2185.947 kb on + strand, within EX28DRAFT_2162 at 2186.339 kb on + strand, within EX28DRAFT_2163 at 2186.340 kb on - strand, within EX28DRAFT_2163 at 2186.373 kb on - strand, within EX28DRAFT_2163 at 2186.373 kb on - strand, within EX28DRAFT_2163 at 2186.402 kb on + strand, within EX28DRAFT_2163 at 2186.420 kb on - strand, within EX28DRAFT_2163 at 2186.420 kb on - strand, within EX28DRAFT_2163 at 2186.493 kb on - strand, within EX28DRAFT_2163 at 2186.493 kb on - strand, within EX28DRAFT_2163 at 2186.493 kb on - strand, within EX28DRAFT_2163 at 2186.569 kb on + strand, within EX28DRAFT_2163 at 2186.570 kb on - strand, within EX28DRAFT_2163 at 2186.570 kb on - strand, within EX28DRAFT_2163 at 2186.645 kb on - strand, within EX28DRAFT_2163 at 2186.657 kb on + strand, within EX28DRAFT_2163 at 2186.657 kb on + strand, within EX28DRAFT_2163 at 2186.657 kb on + strand, within EX28DRAFT_2163 at 2186.682 kb on - strand, within EX28DRAFT_2163 at 2186.735 kb on + strand, within EX28DRAFT_2163 at 2186.735 kb on + strand, within EX28DRAFT_2163 at 2186.736 kb on - strand, within EX28DRAFT_2163 at 2186.736 kb on - strand, within EX28DRAFT_2163 at 2186.736 kb on - strand, within EX28DRAFT_2163 at 2186.736 kb on - strand, within EX28DRAFT_2163 at 2186.736 kb on - strand, within EX28DRAFT_2163 at 2186.773 kb on + strand, within EX28DRAFT_2163 at 2186.774 kb on - strand, within EX28DRAFT_2163 at 2186.808 kb on - strand at 2186.829 kb on + strand at 2186.833 kb on + strand at 2186.833 kb on + strand at 2186.862 kb on - strand at 2186.908 kb on + strand at 2186.908 kb on + strand at 2186.908 kb on + strand at 2186.938 kb on - strand at 2186.952 kb on - strand at 2186.999 kb on + strand at 2187.078 kb on + strand at 2187.078 kb on + strand at 2187.078 kb on + strand at 2187.079 kb on - strand at 2187.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,184,932 + +0.4 2,185,114 + EX28DRAFT_2161 0.15 +0.3 2,185,114 + EX28DRAFT_2161 0.15 +0.2 2,185,115 - EX28DRAFT_2161 0.15 +0.1 2,185,115 - EX28DRAFT_2161 0.15 +0.1 2,185,172 + EX28DRAFT_2161 0.26 +1.3 2,185,191 - EX28DRAFT_2161 0.30 -0.6 2,185,448 + EX28DRAFT_2161 0.79 +0.5 2,185,524 - -0.2 2,185,947 + EX28DRAFT_2162 0.36 -0.4 2,186,339 + EX28DRAFT_2163 0.17 -0.5 2,186,340 - EX28DRAFT_2163 0.18 -1.8 2,186,373 - EX28DRAFT_2163 0.23 -0.6 2,186,373 - EX28DRAFT_2163 0.23 +0.3 2,186,402 + EX28DRAFT_2163 0.27 +0.9 2,186,420 - EX28DRAFT_2163 0.30 -0.2 2,186,420 - EX28DRAFT_2163 0.30 -0.3 2,186,493 - EX28DRAFT_2163 0.41 -0.4 2,186,493 - EX28DRAFT_2163 0.41 +0.8 2,186,493 - EX28DRAFT_2163 0.41 -0.5 2,186,569 + EX28DRAFT_2163 0.53 -0.4 2,186,570 - EX28DRAFT_2163 0.54 +0.3 2,186,570 - EX28DRAFT_2163 0.54 -1.6 2,186,645 - EX28DRAFT_2163 0.65 +0.4 2,186,657 + EX28DRAFT_2163 0.67 +0.9 2,186,657 + EX28DRAFT_2163 0.67 -0.4 2,186,657 + EX28DRAFT_2163 0.67 +2.0 2,186,682 - EX28DRAFT_2163 0.71 +0.0 2,186,735 + EX28DRAFT_2163 0.79 -1.1 2,186,735 + EX28DRAFT_2163 0.79 +0.6 2,186,736 - EX28DRAFT_2163 0.79 +2.5 2,186,736 - EX28DRAFT_2163 0.79 -0.2 2,186,736 - EX28DRAFT_2163 0.79 -0.1 2,186,736 - EX28DRAFT_2163 0.79 -2.3 2,186,736 - EX28DRAFT_2163 0.79 +1.0 2,186,773 + EX28DRAFT_2163 0.85 -0.1 2,186,774 - EX28DRAFT_2163 0.85 -0.0 2,186,808 - -0.3 2,186,829 + +0.2 2,186,833 + -0.9 2,186,833 + -0.2 2,186,862 - +0.1 2,186,908 + -1.2 2,186,908 + -0.5 2,186,908 + -3.8 2,186,938 - -0.4 2,186,952 - +1.1 2,186,999 + -0.5 2,187,078 + +0.2 2,187,078 + -0.4 2,187,078 + -0.1 2,187,079 - -0.1 2,187,106 - +0.0
Or see this region's nucleotide sequence