Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2143 and EX28DRAFT_2144 overlap by 4 nucleotides EX28DRAFT_2144 and EX28DRAFT_2145 are separated by 288 nucleotides
EX28DRAFT_2143: EX28DRAFT_2143 - Protein of unknown function (DUF1479), at 2,164,556 to 2,165,812
_2143
EX28DRAFT_2144: EX28DRAFT_2144 - Transcriptional regulators, at 2,165,809 to 2,166,882
_2144
EX28DRAFT_2145: EX28DRAFT_2145 - Sugar phosphate permease, at 2,167,171 to 2,168,472
_2145
Position (kb)
2165
2166
2167 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2164.905 kb on - strand, within EX28DRAFT_2143 at 2164.970 kb on + strand, within EX28DRAFT_2143 at 2165.100 kb on - strand, within EX28DRAFT_2143 at 2165.199 kb on - strand, within EX28DRAFT_2143 at 2165.244 kb on - strand, within EX28DRAFT_2143 at 2165.286 kb on - strand, within EX28DRAFT_2143 at 2165.286 kb on - strand, within EX28DRAFT_2143 at 2165.382 kb on + strand, within EX28DRAFT_2143 at 2165.382 kb on + strand, within EX28DRAFT_2143 at 2165.408 kb on + strand, within EX28DRAFT_2143 at 2165.409 kb on - strand, within EX28DRAFT_2143 at 2165.409 kb on - strand, within EX28DRAFT_2143 at 2165.630 kb on + strand, within EX28DRAFT_2143 at 2165.631 kb on - strand, within EX28DRAFT_2143 at 2165.631 kb on - strand, within EX28DRAFT_2143 at 2165.631 kb on - strand, within EX28DRAFT_2143 at 2165.736 kb on - strand at 2165.810 kb on + strand at 2165.810 kb on + strand at 2165.819 kb on + strand at 2165.820 kb on - strand at 2165.863 kb on + strand at 2165.955 kb on + strand, within EX28DRAFT_2144 at 2165.957 kb on + strand, within EX28DRAFT_2144 at 2165.957 kb on + strand, within EX28DRAFT_2144 at 2165.957 kb on + strand, within EX28DRAFT_2144 at 2166.148 kb on + strand, within EX28DRAFT_2144 at 2166.439 kb on - strand, within EX28DRAFT_2144 at 2166.439 kb on - strand, within EX28DRAFT_2144 at 2166.705 kb on + strand, within EX28DRAFT_2144 at 2166.705 kb on + strand, within EX28DRAFT_2144 at 2166.952 kb on - strand at 2166.952 kb on - strand at 2167.034 kb on - strand at 2167.240 kb on + strand at 2167.240 kb on + strand at 2167.259 kb on + strand at 2167.259 kb on + strand at 2167.279 kb on + strand at 2167.279 kb on + strand at 2167.279 kb on + strand at 2167.279 kb on + strand at 2167.280 kb on - strand at 2167.352 kb on - strand, within EX28DRAFT_2145 at 2167.385 kb on - strand, within EX28DRAFT_2145 at 2167.386 kb on + strand, within EX28DRAFT_2145 at 2167.386 kb on + strand, within EX28DRAFT_2145 at 2167.387 kb on - strand, within EX28DRAFT_2145 at 2167.479 kb on + strand, within EX28DRAFT_2145 at 2167.519 kb on - strand, within EX28DRAFT_2145 at 2167.675 kb on + strand, within EX28DRAFT_2145 at 2167.676 kb on - strand, within EX28DRAFT_2145 at 2167.714 kb on - strand, within EX28DRAFT_2145 at 2167.765 kb on + strand, within EX28DRAFT_2145 at 2167.765 kb on + strand, within EX28DRAFT_2145 at 2167.766 kb on - strand, within EX28DRAFT_2145 at 2167.766 kb on - strand, within EX28DRAFT_2145 at 2167.766 kb on - strand, within EX28DRAFT_2145
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,164,905 - EX28DRAFT_2143 0.28 -0.1 2,164,970 + EX28DRAFT_2143 0.33 +0.1 2,165,100 - EX28DRAFT_2143 0.43 -0.4 2,165,199 - EX28DRAFT_2143 0.51 -0.5 2,165,244 - EX28DRAFT_2143 0.55 +0.2 2,165,286 - EX28DRAFT_2143 0.58 +0.3 2,165,286 - EX28DRAFT_2143 0.58 +1.0 2,165,382 + EX28DRAFT_2143 0.66 +0.8 2,165,382 + EX28DRAFT_2143 0.66 +0.1 2,165,408 + EX28DRAFT_2143 0.68 +0.4 2,165,409 - EX28DRAFT_2143 0.68 +0.2 2,165,409 - EX28DRAFT_2143 0.68 +0.0 2,165,630 + EX28DRAFT_2143 0.85 +0.8 2,165,631 - EX28DRAFT_2143 0.86 +0.1 2,165,631 - EX28DRAFT_2143 0.86 -0.3 2,165,631 - EX28DRAFT_2143 0.86 +0.1 2,165,736 - -0.5 2,165,810 + +0.3 2,165,810 + -0.0 2,165,819 + -0.3 2,165,820 - +0.6 2,165,863 + -0.8 2,165,955 + EX28DRAFT_2144 0.14 +0.2 2,165,957 + EX28DRAFT_2144 0.14 +0.1 2,165,957 + EX28DRAFT_2144 0.14 -2.2 2,165,957 + EX28DRAFT_2144 0.14 -0.5 2,166,148 + EX28DRAFT_2144 0.32 -0.8 2,166,439 - EX28DRAFT_2144 0.59 +0.3 2,166,439 - EX28DRAFT_2144 0.59 -0.0 2,166,705 + EX28DRAFT_2144 0.83 -0.6 2,166,705 + EX28DRAFT_2144 0.83 -0.0 2,166,952 - -0.1 2,166,952 - -0.4 2,167,034 - -0.5 2,167,240 + -0.5 2,167,240 + -0.0 2,167,259 + -0.5 2,167,259 + -0.3 2,167,279 + -0.6 2,167,279 + -1.0 2,167,279 + +3.5 2,167,279 + +0.2 2,167,280 - +0.3 2,167,352 - EX28DRAFT_2145 0.14 -0.1 2,167,385 - EX28DRAFT_2145 0.16 -0.0 2,167,386 + EX28DRAFT_2145 0.17 -1.0 2,167,386 + EX28DRAFT_2145 0.17 -0.3 2,167,387 - EX28DRAFT_2145 0.17 -0.6 2,167,479 + EX28DRAFT_2145 0.24 -0.2 2,167,519 - EX28DRAFT_2145 0.27 +0.5 2,167,675 + EX28DRAFT_2145 0.39 +0.2 2,167,676 - EX28DRAFT_2145 0.39 +0.5 2,167,714 - EX28DRAFT_2145 0.42 -0.2 2,167,765 + EX28DRAFT_2145 0.46 +1.2 2,167,765 + EX28DRAFT_2145 0.46 -1.0 2,167,766 - EX28DRAFT_2145 0.46 -0.7 2,167,766 - EX28DRAFT_2145 0.46 -0.9 2,167,766 - EX28DRAFT_2145 0.46 +0.3
Or see this region's nucleotide sequence