Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2138

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2137 and EX28DRAFT_2138 are separated by 1 nucleotidesEX28DRAFT_2138 and EX28DRAFT_2139 are separated by 89 nucleotidesEX28DRAFT_2139 and EX28DRAFT_2140 are separated by 128 nucleotides EX28DRAFT_2137: EX28DRAFT_2137 - molybdenum cofactor synthesis domain, at 2,157,195 to 2,158,427 _2137 EX28DRAFT_2138: EX28DRAFT_2138 - molybdopterin synthase sulfurylase MoeB, at 2,158,429 to 2,159,181 _2138 EX28DRAFT_2139: EX28DRAFT_2139 - fructose-6-phosphate aldolase, TalC/MipB family, at 2,159,271 to 2,159,933 _2139 EX28DRAFT_2140: EX28DRAFT_2140 - glycyl-radical enzyme activating protein, at 2,160,062 to 2,160,961 _2140 Position (kb) 2158 2159 2160Strain fitness (log2 ratio) -2 -1 0 1 2at 2157.620 kb on + strand, within EX28DRAFT_2137at 2157.621 kb on - strand, within EX28DRAFT_2137at 2157.798 kb on + strand, within EX28DRAFT_2137at 2157.972 kb on + strand, within EX28DRAFT_2137at 2157.973 kb on - strand, within EX28DRAFT_2137at 2158.396 kb on + strandat 2158.397 kb on - strandat 2158.465 kb on + strandat 2158.577 kb on - strand, within EX28DRAFT_2138at 2158.577 kb on - strand, within EX28DRAFT_2138at 2158.687 kb on - strand, within EX28DRAFT_2138at 2159.075 kb on - strand, within EX28DRAFT_2138at 2159.107 kb on + strandat 2159.107 kb on + strandat 2159.107 kb on + strandat 2159.107 kb on + strandat 2159.107 kb on + strandat 2159.107 kb on + strandat 2159.107 kb on + strandat 2159.107 kb on + strandat 2159.108 kb on - strandat 2159.108 kb on - strandat 2159.348 kb on + strand, within EX28DRAFT_2139at 2159.351 kb on + strand, within EX28DRAFT_2139at 2159.384 kb on + strand, within EX28DRAFT_2139at 2159.487 kb on + strand, within EX28DRAFT_2139at 2159.542 kb on + strand, within EX28DRAFT_2139at 2159.554 kb on + strand, within EX28DRAFT_2139at 2159.554 kb on + strand, within EX28DRAFT_2139at 2159.554 kb on + strand, within EX28DRAFT_2139at 2159.555 kb on - strand, within EX28DRAFT_2139at 2159.555 kb on - strand, within EX28DRAFT_2139at 2159.555 kb on - strand, within EX28DRAFT_2139at 2159.555 kb on - strand, within EX28DRAFT_2139at 2159.555 kb on - strand, within EX28DRAFT_2139at 2159.555 kb on - strand, within EX28DRAFT_2139at 2159.714 kb on + strand, within EX28DRAFT_2139at 2159.879 kb on + strandat 2159.880 kb on - strandat 2159.923 kb on + strandat 2159.952 kb on - strandat 2159.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,157,620 + EX28DRAFT_2137 0.34 +0.0
2,157,621 - EX28DRAFT_2137 0.35 +0.5
2,157,798 + EX28DRAFT_2137 0.49 +0.5
2,157,972 + EX28DRAFT_2137 0.63 +0.2
2,157,973 - EX28DRAFT_2137 0.63 +0.8
2,158,396 + +0.2
2,158,397 - +0.9
2,158,465 + +0.0
2,158,577 - EX28DRAFT_2138 0.20 +0.7
2,158,577 - EX28DRAFT_2138 0.20 +1.0
2,158,687 - EX28DRAFT_2138 0.34 +0.4
2,159,075 - EX28DRAFT_2138 0.86 +0.7
2,159,107 + +0.8
2,159,107 + -0.0
2,159,107 + +0.3
2,159,107 + -1.6
2,159,107 + +0.8
2,159,107 + +0.9
2,159,107 + +0.8
2,159,107 + +0.7
2,159,108 - +0.7
2,159,108 - +0.5
2,159,348 + EX28DRAFT_2139 0.12 -0.3
2,159,351 + EX28DRAFT_2139 0.12 +1.5
2,159,384 + EX28DRAFT_2139 0.17 -0.2
2,159,487 + EX28DRAFT_2139 0.33 +0.3
2,159,542 + EX28DRAFT_2139 0.41 -0.4
2,159,554 + EX28DRAFT_2139 0.43 -0.6
2,159,554 + EX28DRAFT_2139 0.43 -0.4
2,159,554 + EX28DRAFT_2139 0.43 +0.8
2,159,555 - EX28DRAFT_2139 0.43 +0.9
2,159,555 - EX28DRAFT_2139 0.43 -0.2
2,159,555 - EX28DRAFT_2139 0.43 +0.7
2,159,555 - EX28DRAFT_2139 0.43 -0.0
2,159,555 - EX28DRAFT_2139 0.43 -0.9
2,159,555 - EX28DRAFT_2139 0.43 +0.3
2,159,714 + EX28DRAFT_2139 0.67 -0.8
2,159,879 + +1.9
2,159,880 - +0.2
2,159,923 + +1.4
2,159,952 - +0.2
2,159,963 - -2.1

Or see this region's nucleotide sequence