Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2121 and EX28DRAFT_2122 overlap by 11 nucleotides EX28DRAFT_2122 and EX28DRAFT_2123 are separated by 89 nucleotides EX28DRAFT_2123 and EX28DRAFT_2124 are separated by 168 nucleotides EX28DRAFT_2124 and EX28DRAFT_2125 are separated by 7 nucleotides
EX28DRAFT_2121: EX28DRAFT_2121 - Fucose permease, at 2,139,706 to 2,140,920
_2121
EX28DRAFT_2122: EX28DRAFT_2122 - HAD-superfamily hydrolase, subfamily IIB, at 2,140,910 to 2,141,722
_2122
EX28DRAFT_2123: EX28DRAFT_2123 - Major Facilitator Superfamily, at 2,141,812 to 2,143,044
_2123
EX28DRAFT_2124: EX28DRAFT_2124 - PAP2 (acid phosphatase) superfamily protein, at 2,143,213 to 2,143,941
_2124
EX28DRAFT_2125: EX28DRAFT_2125 - Membrane-associated phospholipid phosphatase, at 2,143,949 to 2,144,557
_2125
Position (kb)
2141
2142
2143
2144 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2140.836 kb on - strand at 2140.970 kb on + strand at 2140.970 kb on + strand at 2140.970 kb on + strand at 2140.970 kb on + strand at 2140.970 kb on + strand at 2140.970 kb on + strand at 2140.971 kb on - strand at 2140.971 kb on - strand at 2140.971 kb on - strand at 2140.998 kb on - strand, within EX28DRAFT_2122 at 2141.022 kb on + strand, within EX28DRAFT_2122 at 2141.022 kb on + strand, within EX28DRAFT_2122 at 2141.022 kb on + strand, within EX28DRAFT_2122 at 2141.023 kb on - strand, within EX28DRAFT_2122 at 2141.052 kb on - strand, within EX28DRAFT_2122 at 2141.052 kb on - strand, within EX28DRAFT_2122 at 2141.055 kb on - strand, within EX28DRAFT_2122 at 2141.128 kb on - strand, within EX28DRAFT_2122 at 2141.196 kb on + strand, within EX28DRAFT_2122 at 2141.196 kb on + strand, within EX28DRAFT_2122 at 2141.197 kb on - strand, within EX28DRAFT_2122 at 2141.294 kb on + strand, within EX28DRAFT_2122 at 2141.363 kb on - strand, within EX28DRAFT_2122 at 2141.482 kb on + strand, within EX28DRAFT_2122 at 2141.482 kb on + strand, within EX28DRAFT_2122 at 2141.624 kb on - strand, within EX28DRAFT_2122 at 2141.624 kb on - strand, within EX28DRAFT_2122 at 2141.627 kb on - strand, within EX28DRAFT_2122 at 2141.659 kb on + strand at 2141.660 kb on - strand at 2141.864 kb on - strand at 2142.181 kb on - strand, within EX28DRAFT_2123 at 2142.276 kb on - strand, within EX28DRAFT_2123 at 2142.281 kb on + strand, within EX28DRAFT_2123 at 2142.410 kb on + strand, within EX28DRAFT_2123 at 2142.411 kb on - strand, within EX28DRAFT_2123 at 2142.411 kb on - strand, within EX28DRAFT_2123 at 2142.628 kb on - strand, within EX28DRAFT_2123 at 2142.628 kb on - strand, within EX28DRAFT_2123 at 2142.956 kb on + strand at 2142.956 kb on + strand at 2142.956 kb on + strand at 2142.957 kb on - strand at 2142.957 kb on - strand at 2142.972 kb on - strand at 2143.056 kb on - strand at 2143.057 kb on + strand at 2143.058 kb on - strand at 2143.058 kb on - strand at 2143.111 kb on + strand at 2143.130 kb on + strand at 2143.131 kb on - strand at 2143.139 kb on + strand at 2143.139 kb on + strand at 2143.139 kb on + strand at 2143.140 kb on - strand at 2143.163 kb on + strand at 2143.177 kb on + strand at 2143.177 kb on + strand at 2143.177 kb on + strand at 2143.177 kb on + strand at 2143.178 kb on - strand at 2143.212 kb on + strand at 2143.212 kb on + strand at 2143.212 kb on + strand at 2143.213 kb on - strand at 2143.261 kb on - strand at 2143.298 kb on - strand, within EX28DRAFT_2124 at 2143.468 kb on + strand, within EX28DRAFT_2124 at 2143.468 kb on + strand, within EX28DRAFT_2124 at 2143.468 kb on + strand, within EX28DRAFT_2124 at 2143.469 kb on - strand, within EX28DRAFT_2124 at 2143.469 kb on - strand, within EX28DRAFT_2124 at 2143.505 kb on - strand, within EX28DRAFT_2124 at 2143.522 kb on - strand, within EX28DRAFT_2124 at 2143.642 kb on - strand, within EX28DRAFT_2124 at 2143.822 kb on + strand, within EX28DRAFT_2124 at 2143.907 kb on - strand at 2143.943 kb on - strand at 2143.948 kb on + strand at 2143.948 kb on + strand at 2143.948 kb on + strand at 2143.949 kb on - strand at 2143.949 kb on - strand at 2143.967 kb on + strand at 2143.967 kb on + strand at 2143.967 kb on + strand at 2143.979 kb on + strand at 2143.979 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,140,836 - +0.0 2,140,970 + +0.3 2,140,970 + +0.4 2,140,970 + -0.4 2,140,970 + +0.1 2,140,970 + -0.3 2,140,970 + +0.8 2,140,971 - -0.6 2,140,971 - +0.4 2,140,971 - -1.0 2,140,998 - EX28DRAFT_2122 0.11 +2.0 2,141,022 + EX28DRAFT_2122 0.14 +0.1 2,141,022 + EX28DRAFT_2122 0.14 +0.4 2,141,022 + EX28DRAFT_2122 0.14 +0.6 2,141,023 - EX28DRAFT_2122 0.14 -0.5 2,141,052 - EX28DRAFT_2122 0.17 +0.0 2,141,052 - EX28DRAFT_2122 0.17 -0.3 2,141,055 - EX28DRAFT_2122 0.18 +0.6 2,141,128 - EX28DRAFT_2122 0.27 -0.1 2,141,196 + EX28DRAFT_2122 0.35 +0.2 2,141,196 + EX28DRAFT_2122 0.35 +1.2 2,141,197 - EX28DRAFT_2122 0.35 -0.1 2,141,294 + EX28DRAFT_2122 0.47 +0.6 2,141,363 - EX28DRAFT_2122 0.56 +0.8 2,141,482 + EX28DRAFT_2122 0.70 +0.4 2,141,482 + EX28DRAFT_2122 0.70 -0.5 2,141,624 - EX28DRAFT_2122 0.88 -1.4 2,141,624 - EX28DRAFT_2122 0.88 -0.1 2,141,627 - EX28DRAFT_2122 0.88 +1.6 2,141,659 + +0.2 2,141,660 - -0.1 2,141,864 - +1.2 2,142,181 - EX28DRAFT_2123 0.30 +0.1 2,142,276 - EX28DRAFT_2123 0.38 -1.1 2,142,281 + EX28DRAFT_2123 0.38 -0.9 2,142,410 + EX28DRAFT_2123 0.48 +2.9 2,142,411 - EX28DRAFT_2123 0.49 -0.4 2,142,411 - EX28DRAFT_2123 0.49 -0.7 2,142,628 - EX28DRAFT_2123 0.66 +0.6 2,142,628 - EX28DRAFT_2123 0.66 -1.8 2,142,956 + +0.6 2,142,956 + +0.9 2,142,956 + +0.1 2,142,957 - -0.5 2,142,957 - +0.1 2,142,972 - +0.3 2,143,056 - +0.2 2,143,057 + -0.1 2,143,058 - -1.3 2,143,058 - -0.3 2,143,111 + -0.3 2,143,130 + +0.1 2,143,131 - +0.1 2,143,139 + +0.7 2,143,139 + +0.3 2,143,139 + -0.5 2,143,140 - +0.2 2,143,163 + +0.1 2,143,177 + +0.9 2,143,177 + -0.5 2,143,177 + +0.1 2,143,177 + -0.8 2,143,178 - -0.2 2,143,212 + -0.5 2,143,212 + +0.1 2,143,212 + -0.0 2,143,213 - +1.7 2,143,261 - +0.5 2,143,298 - EX28DRAFT_2124 0.12 -0.1 2,143,468 + EX28DRAFT_2124 0.35 +0.5 2,143,468 + EX28DRAFT_2124 0.35 -2.6 2,143,468 + EX28DRAFT_2124 0.35 +0.9 2,143,469 - EX28DRAFT_2124 0.35 -1.4 2,143,469 - EX28DRAFT_2124 0.35 -0.3 2,143,505 - EX28DRAFT_2124 0.40 +1.1 2,143,522 - EX28DRAFT_2124 0.42 -1.7 2,143,642 - EX28DRAFT_2124 0.59 -0.5 2,143,822 + EX28DRAFT_2124 0.84 -0.5 2,143,907 - -0.6 2,143,943 - +0.6 2,143,948 + -0.0 2,143,948 + +0.1 2,143,948 + -0.3 2,143,949 - -0.5 2,143,949 - +0.2 2,143,967 + +0.5 2,143,967 + +0.7 2,143,967 + -1.2 2,143,979 + -0.4 2,143,979 + +0.6
Or see this region's nucleotide sequence