Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2122

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2121 and EX28DRAFT_2122 overlap by 11 nucleotidesEX28DRAFT_2122 and EX28DRAFT_2123 are separated by 89 nucleotides EX28DRAFT_2121: EX28DRAFT_2121 - Fucose permease, at 2,139,706 to 2,140,920 _2121 EX28DRAFT_2122: EX28DRAFT_2122 - HAD-superfamily hydrolase, subfamily IIB, at 2,140,910 to 2,141,722 _2122 EX28DRAFT_2123: EX28DRAFT_2123 - Major Facilitator Superfamily, at 2,141,812 to 2,143,044 _2123 Position (kb) 2140 2141 2142Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2140.082 kb on + strand, within EX28DRAFT_2121at 2140.082 kb on + strand, within EX28DRAFT_2121at 2140.218 kb on + strand, within EX28DRAFT_2121at 2140.434 kb on - strand, within EX28DRAFT_2121at 2140.747 kb on + strand, within EX28DRAFT_2121at 2140.748 kb on - strand, within EX28DRAFT_2121at 2140.836 kb on - strandat 2140.970 kb on + strandat 2140.970 kb on + strandat 2140.970 kb on + strandat 2140.970 kb on + strandat 2140.970 kb on + strandat 2140.970 kb on + strandat 2140.971 kb on - strandat 2140.971 kb on - strandat 2140.971 kb on - strandat 2140.998 kb on - strand, within EX28DRAFT_2122at 2141.022 kb on + strand, within EX28DRAFT_2122at 2141.022 kb on + strand, within EX28DRAFT_2122at 2141.022 kb on + strand, within EX28DRAFT_2122at 2141.023 kb on - strand, within EX28DRAFT_2122at 2141.052 kb on - strand, within EX28DRAFT_2122at 2141.052 kb on - strand, within EX28DRAFT_2122at 2141.055 kb on - strand, within EX28DRAFT_2122at 2141.128 kb on - strand, within EX28DRAFT_2122at 2141.196 kb on + strand, within EX28DRAFT_2122at 2141.196 kb on + strand, within EX28DRAFT_2122at 2141.197 kb on - strand, within EX28DRAFT_2122at 2141.294 kb on + strand, within EX28DRAFT_2122at 2141.363 kb on - strand, within EX28DRAFT_2122at 2141.482 kb on + strand, within EX28DRAFT_2122at 2141.482 kb on + strand, within EX28DRAFT_2122at 2141.624 kb on - strand, within EX28DRAFT_2122at 2141.624 kb on - strand, within EX28DRAFT_2122at 2141.627 kb on - strand, within EX28DRAFT_2122at 2141.659 kb on + strandat 2141.660 kb on - strandat 2141.864 kb on - strandat 2142.181 kb on - strand, within EX28DRAFT_2123at 2142.276 kb on - strand, within EX28DRAFT_2123at 2142.281 kb on + strand, within EX28DRAFT_2123at 2142.410 kb on + strand, within EX28DRAFT_2123at 2142.411 kb on - strand, within EX28DRAFT_2123at 2142.411 kb on - strand, within EX28DRAFT_2123at 2142.628 kb on - strand, within EX28DRAFT_2123at 2142.628 kb on - strand, within EX28DRAFT_2123

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,140,082 + EX28DRAFT_2121 0.31 +0.1
2,140,082 + EX28DRAFT_2121 0.31 -0.5
2,140,218 + EX28DRAFT_2121 0.42 -0.1
2,140,434 - EX28DRAFT_2121 0.60 +0.2
2,140,747 + EX28DRAFT_2121 0.86 +1.7
2,140,748 - EX28DRAFT_2121 0.86 -0.1
2,140,836 - +0.0
2,140,970 + +0.3
2,140,970 + +0.4
2,140,970 + -0.4
2,140,970 + +0.1
2,140,970 + -0.3
2,140,970 + +0.8
2,140,971 - -0.6
2,140,971 - +0.4
2,140,971 - -1.0
2,140,998 - EX28DRAFT_2122 0.11 +2.0
2,141,022 + EX28DRAFT_2122 0.14 +0.1
2,141,022 + EX28DRAFT_2122 0.14 +0.4
2,141,022 + EX28DRAFT_2122 0.14 +0.6
2,141,023 - EX28DRAFT_2122 0.14 -0.5
2,141,052 - EX28DRAFT_2122 0.17 +0.0
2,141,052 - EX28DRAFT_2122 0.17 -0.3
2,141,055 - EX28DRAFT_2122 0.18 +0.6
2,141,128 - EX28DRAFT_2122 0.27 -0.1
2,141,196 + EX28DRAFT_2122 0.35 +0.2
2,141,196 + EX28DRAFT_2122 0.35 +1.2
2,141,197 - EX28DRAFT_2122 0.35 -0.1
2,141,294 + EX28DRAFT_2122 0.47 +0.6
2,141,363 - EX28DRAFT_2122 0.56 +0.8
2,141,482 + EX28DRAFT_2122 0.70 +0.4
2,141,482 + EX28DRAFT_2122 0.70 -0.5
2,141,624 - EX28DRAFT_2122 0.88 -1.4
2,141,624 - EX28DRAFT_2122 0.88 -0.1
2,141,627 - EX28DRAFT_2122 0.88 +1.6
2,141,659 + +0.2
2,141,660 - -0.1
2,141,864 - +1.2
2,142,181 - EX28DRAFT_2123 0.30 +0.1
2,142,276 - EX28DRAFT_2123 0.38 -1.1
2,142,281 + EX28DRAFT_2123 0.38 -0.9
2,142,410 + EX28DRAFT_2123 0.48 +2.9
2,142,411 - EX28DRAFT_2123 0.49 -0.4
2,142,411 - EX28DRAFT_2123 0.49 -0.7
2,142,628 - EX28DRAFT_2123 0.66 +0.6
2,142,628 - EX28DRAFT_2123 0.66 -1.8

Or see this region's nucleotide sequence