Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2095 and EX28DRAFT_2096 are separated by 65 nucleotides EX28DRAFT_2096 and EX28DRAFT_2097 overlap by 4 nucleotides EX28DRAFT_2097 and EX28DRAFT_2098 are separated by 9 nucleotides
EX28DRAFT_2095: EX28DRAFT_2095 - Protein of unknown function (DUF2593), at 2,119,320 to 2,119,793
_2095
EX28DRAFT_2096: EX28DRAFT_2096 - ABC-type spermidine/putrescine transport system, permease component II, at 2,119,859 to 2,120,704
_2096
EX28DRAFT_2097: EX28DRAFT_2097 - ABC-type spermidine/putrescine transport system, permease component I, at 2,120,701 to 2,121,654
_2097
EX28DRAFT_2098: EX28DRAFT_2098 - spermidine/putrescine ABC transporter ATP-binding subunit, at 2,121,664 to 2,122,797
_2098
Position (kb)
2120
2121
2122 Strain fitness (log2 ratio)
-2
-1
0
1 at 2119.709 kb on + strand, within EX28DRAFT_2095 at 2119.710 kb on - strand, within EX28DRAFT_2095 at 2119.710 kb on - strand, within EX28DRAFT_2095 at 2119.710 kb on - strand, within EX28DRAFT_2095 at 2119.712 kb on + strand, within EX28DRAFT_2095 at 2119.746 kb on + strand at 2119.746 kb on + strand at 2119.747 kb on - strand at 2119.747 kb on - strand at 2119.752 kb on - strand at 2119.766 kb on + strand at 2119.766 kb on + strand at 2119.767 kb on - strand at 2119.767 kb on - strand at 2119.767 kb on - strand at 2119.770 kb on - strand at 2119.799 kb on + strand at 2119.963 kb on + strand, within EX28DRAFT_2096 at 2119.963 kb on + strand, within EX28DRAFT_2096 at 2119.964 kb on - strand, within EX28DRAFT_2096 at 2120.244 kb on + strand, within EX28DRAFT_2096 at 2120.244 kb on + strand, within EX28DRAFT_2096 at 2120.245 kb on - strand, within EX28DRAFT_2096 at 2120.252 kb on - strand, within EX28DRAFT_2096 at 2120.393 kb on - strand, within EX28DRAFT_2096 at 2120.550 kb on + strand, within EX28DRAFT_2096 at 2120.551 kb on - strand, within EX28DRAFT_2096 at 2120.608 kb on - strand, within EX28DRAFT_2096 at 2120.608 kb on - strand, within EX28DRAFT_2096 at 2120.635 kb on - strand at 2120.694 kb on - strand at 2121.021 kb on - strand, within EX28DRAFT_2097 at 2121.021 kb on - strand, within EX28DRAFT_2097 at 2121.071 kb on + strand, within EX28DRAFT_2097 at 2121.077 kb on + strand, within EX28DRAFT_2097 at 2121.077 kb on + strand, within EX28DRAFT_2097 at 2121.077 kb on + strand, within EX28DRAFT_2097 at 2121.078 kb on - strand, within EX28DRAFT_2097 at 2121.093 kb on - strand, within EX28DRAFT_2097 at 2121.093 kb on - strand, within EX28DRAFT_2097 at 2121.256 kb on - strand, within EX28DRAFT_2097 at 2121.259 kb on - strand, within EX28DRAFT_2097 at 2121.259 kb on - strand, within EX28DRAFT_2097 at 2121.372 kb on - strand, within EX28DRAFT_2097 at 2121.456 kb on + strand, within EX28DRAFT_2097 at 2121.493 kb on + strand, within EX28DRAFT_2097 at 2121.545 kb on + strand, within EX28DRAFT_2097 at 2121.666 kb on - strand at 2121.666 kb on - strand at 2121.804 kb on - strand, within EX28DRAFT_2098 at 2121.804 kb on - strand, within EX28DRAFT_2098 at 2121.804 kb on - strand, within EX28DRAFT_2098 at 2121.807 kb on + strand, within EX28DRAFT_2098 at 2121.808 kb on - strand, within EX28DRAFT_2098 at 2121.860 kb on + strand, within EX28DRAFT_2098 at 2121.917 kb on + strand, within EX28DRAFT_2098 at 2121.917 kb on + strand, within EX28DRAFT_2098 at 2122.140 kb on + strand, within EX28DRAFT_2098 at 2122.140 kb on + strand, within EX28DRAFT_2098 at 2122.237 kb on - strand, within EX28DRAFT_2098 at 2122.289 kb on - strand, within EX28DRAFT_2098
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,119,709 + EX28DRAFT_2095 0.82 -0.9 2,119,710 - EX28DRAFT_2095 0.82 -1.1 2,119,710 - EX28DRAFT_2095 0.82 -1.5 2,119,710 - EX28DRAFT_2095 0.82 -0.2 2,119,712 + EX28DRAFT_2095 0.83 +0.5 2,119,746 + +0.1 2,119,746 + +0.9 2,119,747 - -0.2 2,119,747 - -0.2 2,119,752 - +0.1 2,119,766 + -0.1 2,119,766 + +0.5 2,119,767 - +0.2 2,119,767 - +0.1 2,119,767 - +1.1 2,119,770 - +1.1 2,119,799 + -0.7 2,119,963 + EX28DRAFT_2096 0.12 +0.5 2,119,963 + EX28DRAFT_2096 0.12 +0.1 2,119,964 - EX28DRAFT_2096 0.12 +0.1 2,120,244 + EX28DRAFT_2096 0.46 +0.0 2,120,244 + EX28DRAFT_2096 0.46 +1.1 2,120,245 - EX28DRAFT_2096 0.46 -0.2 2,120,252 - EX28DRAFT_2096 0.46 -0.4 2,120,393 - EX28DRAFT_2096 0.63 +0.4 2,120,550 + EX28DRAFT_2096 0.82 +0.5 2,120,551 - EX28DRAFT_2096 0.82 -0.2 2,120,608 - EX28DRAFT_2096 0.89 +0.4 2,120,608 - EX28DRAFT_2096 0.89 +0.5 2,120,635 - -1.3 2,120,694 - +0.2 2,121,021 - EX28DRAFT_2097 0.34 +0.4 2,121,021 - EX28DRAFT_2097 0.34 +0.3 2,121,071 + EX28DRAFT_2097 0.39 -0.7 2,121,077 + EX28DRAFT_2097 0.39 +1.2 2,121,077 + EX28DRAFT_2097 0.39 +0.1 2,121,077 + EX28DRAFT_2097 0.39 +0.1 2,121,078 - EX28DRAFT_2097 0.40 +0.2 2,121,093 - EX28DRAFT_2097 0.41 -0.7 2,121,093 - EX28DRAFT_2097 0.41 +1.6 2,121,256 - EX28DRAFT_2097 0.58 +0.7 2,121,259 - EX28DRAFT_2097 0.58 -0.5 2,121,259 - EX28DRAFT_2097 0.58 +0.3 2,121,372 - EX28DRAFT_2097 0.70 +1.4 2,121,456 + EX28DRAFT_2097 0.79 +0.2 2,121,493 + EX28DRAFT_2097 0.83 -0.4 2,121,545 + EX28DRAFT_2097 0.88 -0.2 2,121,666 - +0.2 2,121,666 - -2.7 2,121,804 - EX28DRAFT_2098 0.12 -0.3 2,121,804 - EX28DRAFT_2098 0.12 +0.3 2,121,804 - EX28DRAFT_2098 0.12 +0.1 2,121,807 + EX28DRAFT_2098 0.13 -0.0 2,121,808 - EX28DRAFT_2098 0.13 +0.2 2,121,860 + EX28DRAFT_2098 0.17 -1.2 2,121,917 + EX28DRAFT_2098 0.22 +0.9 2,121,917 + EX28DRAFT_2098 0.22 +0.1 2,122,140 + EX28DRAFT_2098 0.42 +0.0 2,122,140 + EX28DRAFT_2098 0.42 -1.0 2,122,237 - EX28DRAFT_2098 0.51 +0.5 2,122,289 - EX28DRAFT_2098 0.55 +0.5
Or see this region's nucleotide sequence