Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2097

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2095 and EX28DRAFT_2096 are separated by 65 nucleotidesEX28DRAFT_2096 and EX28DRAFT_2097 overlap by 4 nucleotidesEX28DRAFT_2097 and EX28DRAFT_2098 are separated by 9 nucleotides EX28DRAFT_2095: EX28DRAFT_2095 - Protein of unknown function (DUF2593), at 2,119,320 to 2,119,793 _2095 EX28DRAFT_2096: EX28DRAFT_2096 - ABC-type spermidine/putrescine transport system, permease component II, at 2,119,859 to 2,120,704 _2096 EX28DRAFT_2097: EX28DRAFT_2097 - ABC-type spermidine/putrescine transport system, permease component I, at 2,120,701 to 2,121,654 _2097 EX28DRAFT_2098: EX28DRAFT_2098 - spermidine/putrescine ABC transporter ATP-binding subunit, at 2,121,664 to 2,122,797 _2098 Position (kb) 2120 2121 2122Strain fitness (log2 ratio) -2 -1 0 1at 2119.709 kb on + strand, within EX28DRAFT_2095at 2119.710 kb on - strand, within EX28DRAFT_2095at 2119.710 kb on - strand, within EX28DRAFT_2095at 2119.710 kb on - strand, within EX28DRAFT_2095at 2119.712 kb on + strand, within EX28DRAFT_2095at 2119.746 kb on + strandat 2119.746 kb on + strandat 2119.747 kb on - strandat 2119.747 kb on - strandat 2119.752 kb on - strandat 2119.766 kb on + strandat 2119.766 kb on + strandat 2119.767 kb on - strandat 2119.767 kb on - strandat 2119.767 kb on - strandat 2119.770 kb on - strandat 2119.799 kb on + strandat 2119.963 kb on + strand, within EX28DRAFT_2096at 2119.963 kb on + strand, within EX28DRAFT_2096at 2119.964 kb on - strand, within EX28DRAFT_2096at 2120.244 kb on + strand, within EX28DRAFT_2096at 2120.244 kb on + strand, within EX28DRAFT_2096at 2120.245 kb on - strand, within EX28DRAFT_2096at 2120.252 kb on - strand, within EX28DRAFT_2096at 2120.393 kb on - strand, within EX28DRAFT_2096at 2120.550 kb on + strand, within EX28DRAFT_2096at 2120.551 kb on - strand, within EX28DRAFT_2096at 2120.608 kb on - strand, within EX28DRAFT_2096at 2120.608 kb on - strand, within EX28DRAFT_2096at 2120.635 kb on - strandat 2120.694 kb on - strandat 2121.021 kb on - strand, within EX28DRAFT_2097at 2121.021 kb on - strand, within EX28DRAFT_2097at 2121.071 kb on + strand, within EX28DRAFT_2097at 2121.077 kb on + strand, within EX28DRAFT_2097at 2121.077 kb on + strand, within EX28DRAFT_2097at 2121.077 kb on + strand, within EX28DRAFT_2097at 2121.078 kb on - strand, within EX28DRAFT_2097at 2121.093 kb on - strand, within EX28DRAFT_2097at 2121.093 kb on - strand, within EX28DRAFT_2097at 2121.256 kb on - strand, within EX28DRAFT_2097at 2121.259 kb on - strand, within EX28DRAFT_2097at 2121.259 kb on - strand, within EX28DRAFT_2097at 2121.372 kb on - strand, within EX28DRAFT_2097at 2121.456 kb on + strand, within EX28DRAFT_2097at 2121.493 kb on + strand, within EX28DRAFT_2097at 2121.545 kb on + strand, within EX28DRAFT_2097at 2121.666 kb on - strandat 2121.666 kb on - strandat 2121.804 kb on - strand, within EX28DRAFT_2098at 2121.804 kb on - strand, within EX28DRAFT_2098at 2121.804 kb on - strand, within EX28DRAFT_2098at 2121.807 kb on + strand, within EX28DRAFT_2098at 2121.808 kb on - strand, within EX28DRAFT_2098at 2121.860 kb on + strand, within EX28DRAFT_2098at 2121.917 kb on + strand, within EX28DRAFT_2098at 2121.917 kb on + strand, within EX28DRAFT_2098at 2122.140 kb on + strand, within EX28DRAFT_2098at 2122.140 kb on + strand, within EX28DRAFT_2098at 2122.237 kb on - strand, within EX28DRAFT_2098at 2122.289 kb on - strand, within EX28DRAFT_2098

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,119,709 + EX28DRAFT_2095 0.82 -0.9
2,119,710 - EX28DRAFT_2095 0.82 -1.1
2,119,710 - EX28DRAFT_2095 0.82 -1.5
2,119,710 - EX28DRAFT_2095 0.82 -0.2
2,119,712 + EX28DRAFT_2095 0.83 +0.5
2,119,746 + +0.1
2,119,746 + +0.9
2,119,747 - -0.2
2,119,747 - -0.2
2,119,752 - +0.1
2,119,766 + -0.1
2,119,766 + +0.5
2,119,767 - +0.2
2,119,767 - +0.1
2,119,767 - +1.1
2,119,770 - +1.1
2,119,799 + -0.7
2,119,963 + EX28DRAFT_2096 0.12 +0.5
2,119,963 + EX28DRAFT_2096 0.12 +0.1
2,119,964 - EX28DRAFT_2096 0.12 +0.1
2,120,244 + EX28DRAFT_2096 0.46 +0.0
2,120,244 + EX28DRAFT_2096 0.46 +1.1
2,120,245 - EX28DRAFT_2096 0.46 -0.2
2,120,252 - EX28DRAFT_2096 0.46 -0.4
2,120,393 - EX28DRAFT_2096 0.63 +0.4
2,120,550 + EX28DRAFT_2096 0.82 +0.5
2,120,551 - EX28DRAFT_2096 0.82 -0.2
2,120,608 - EX28DRAFT_2096 0.89 +0.4
2,120,608 - EX28DRAFT_2096 0.89 +0.5
2,120,635 - -1.3
2,120,694 - +0.2
2,121,021 - EX28DRAFT_2097 0.34 +0.4
2,121,021 - EX28DRAFT_2097 0.34 +0.3
2,121,071 + EX28DRAFT_2097 0.39 -0.7
2,121,077 + EX28DRAFT_2097 0.39 +1.2
2,121,077 + EX28DRAFT_2097 0.39 +0.1
2,121,077 + EX28DRAFT_2097 0.39 +0.1
2,121,078 - EX28DRAFT_2097 0.40 +0.2
2,121,093 - EX28DRAFT_2097 0.41 -0.7
2,121,093 - EX28DRAFT_2097 0.41 +1.6
2,121,256 - EX28DRAFT_2097 0.58 +0.7
2,121,259 - EX28DRAFT_2097 0.58 -0.5
2,121,259 - EX28DRAFT_2097 0.58 +0.3
2,121,372 - EX28DRAFT_2097 0.70 +1.4
2,121,456 + EX28DRAFT_2097 0.79 +0.2
2,121,493 + EX28DRAFT_2097 0.83 -0.4
2,121,545 + EX28DRAFT_2097 0.88 -0.2
2,121,666 - +0.2
2,121,666 - -2.7
2,121,804 - EX28DRAFT_2098 0.12 -0.3
2,121,804 - EX28DRAFT_2098 0.12 +0.3
2,121,804 - EX28DRAFT_2098 0.12 +0.1
2,121,807 + EX28DRAFT_2098 0.13 -0.0
2,121,808 - EX28DRAFT_2098 0.13 +0.2
2,121,860 + EX28DRAFT_2098 0.17 -1.2
2,121,917 + EX28DRAFT_2098 0.22 +0.9
2,121,917 + EX28DRAFT_2098 0.22 +0.1
2,122,140 + EX28DRAFT_2098 0.42 +0.0
2,122,140 + EX28DRAFT_2098 0.42 -1.0
2,122,237 - EX28DRAFT_2098 0.51 +0.5
2,122,289 - EX28DRAFT_2098 0.55 +0.5

Or see this region's nucleotide sequence