Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2085

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2084 and EX28DRAFT_2085 overlap by 4 nucleotidesEX28DRAFT_2085 and EX28DRAFT_2086 are separated by 97 nucleotidesEX28DRAFT_2086 and EX28DRAFT_2087 are separated by 226 nucleotides EX28DRAFT_2084: EX28DRAFT_2084 - Negative regulator of beta-lactamase expression, at 2,110,023 to 2,110,853 _2084 EX28DRAFT_2085: EX28DRAFT_2085 - Uncharacterized conserved protein, at 2,110,850 to 2,111,173 _2085 EX28DRAFT_2086: EX28DRAFT_2086 - hypothetical protein, at 2,111,271 to 2,111,789 _2086 EX28DRAFT_2087: EX28DRAFT_2087 - ABC-type arginine transport system, ATPase component, at 2,112,016 to 2,112,744 _2087 Position (kb) 2110 2111 2112Strain fitness (log2 ratio) -1 0 1 2at 2109.884 kb on - strandat 2109.901 kb on - strandat 2109.952 kb on + strandat 2109.996 kb on + strandat 2109.996 kb on + strandat 2110.334 kb on + strand, within EX28DRAFT_2084at 2110.397 kb on + strand, within EX28DRAFT_2084at 2110.639 kb on + strand, within EX28DRAFT_2084at 2110.702 kb on + strand, within EX28DRAFT_2084at 2110.722 kb on + strand, within EX28DRAFT_2084at 2110.722 kb on + strand, within EX28DRAFT_2084at 2110.723 kb on - strand, within EX28DRAFT_2084at 2111.125 kb on - strand, within EX28DRAFT_2085at 2111.133 kb on - strand, within EX28DRAFT_2085at 2111.234 kb on - strandat 2111.251 kb on + strandat 2111.252 kb on - strandat 2111.258 kb on + strandat 2111.259 kb on - strandat 2111.259 kb on - strandat 2111.418 kb on + strand, within EX28DRAFT_2086at 2111.418 kb on + strand, within EX28DRAFT_2086at 2111.530 kb on + strand, within EX28DRAFT_2086at 2111.531 kb on - strand, within EX28DRAFT_2086at 2111.915 kb on - strandat 2111.936 kb on + strandat 2111.965 kb on - strandat 2111.985 kb on + strandat 2111.986 kb on - strandat 2111.986 kb on - strandat 2111.986 kb on - strandat 2111.986 kb on - strandat 2112.002 kb on + strandat 2112.003 kb on - strandat 2112.025 kb on - strandat 2112.029 kb on + strandat 2112.040 kb on - strandat 2112.040 kb on - strandat 2112.049 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,109,884 - -1.2
2,109,901 - -0.5
2,109,952 + -0.3
2,109,996 + +0.3
2,109,996 + -0.4
2,110,334 + EX28DRAFT_2084 0.37 +0.3
2,110,397 + EX28DRAFT_2084 0.45 -0.0
2,110,639 + EX28DRAFT_2084 0.74 +0.2
2,110,702 + EX28DRAFT_2084 0.82 +0.1
2,110,722 + EX28DRAFT_2084 0.84 -0.1
2,110,722 + EX28DRAFT_2084 0.84 -1.0
2,110,723 - EX28DRAFT_2084 0.84 -1.0
2,111,125 - EX28DRAFT_2085 0.85 +0.8
2,111,133 - EX28DRAFT_2085 0.87 +1.0
2,111,234 - +0.5
2,111,251 + -0.1
2,111,252 - +0.2
2,111,258 + +0.7
2,111,259 - +0.2
2,111,259 - +2.1
2,111,418 + EX28DRAFT_2086 0.28 +0.2
2,111,418 + EX28DRAFT_2086 0.28 +0.4
2,111,530 + EX28DRAFT_2086 0.50 -0.4
2,111,531 - EX28DRAFT_2086 0.50 +1.1
2,111,915 - -1.2
2,111,936 + -0.9
2,111,965 - -1.5
2,111,985 + +0.6
2,111,986 - +0.8
2,111,986 - -0.1
2,111,986 - +0.6
2,111,986 - -0.3
2,112,002 + -0.2
2,112,003 - -0.4
2,112,025 - -0.2
2,112,029 + +0.4
2,112,040 - +0.1
2,112,040 - -0.6
2,112,049 + -1.6

Or see this region's nucleotide sequence