Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2084 and EX28DRAFT_2085 overlap by 4 nucleotides EX28DRAFT_2085 and EX28DRAFT_2086 are separated by 97 nucleotides EX28DRAFT_2086 and EX28DRAFT_2087 are separated by 226 nucleotides
EX28DRAFT_2084: EX28DRAFT_2084 - Negative regulator of beta-lactamase expression, at 2,110,023 to 2,110,853
_2084
EX28DRAFT_2085: EX28DRAFT_2085 - Uncharacterized conserved protein, at 2,110,850 to 2,111,173
_2085
EX28DRAFT_2086: EX28DRAFT_2086 - hypothetical protein, at 2,111,271 to 2,111,789
_2086
EX28DRAFT_2087: EX28DRAFT_2087 - ABC-type arginine transport system, ATPase component, at 2,112,016 to 2,112,744
_2087
Position (kb)
2110
2111
2112 Strain fitness (log2 ratio)
-1
0
1
2 at 2109.884 kb on - strand at 2109.901 kb on - strand at 2109.952 kb on + strand at 2109.996 kb on + strand at 2109.996 kb on + strand at 2110.334 kb on + strand, within EX28DRAFT_2084 at 2110.397 kb on + strand, within EX28DRAFT_2084 at 2110.639 kb on + strand, within EX28DRAFT_2084 at 2110.702 kb on + strand, within EX28DRAFT_2084 at 2110.722 kb on + strand, within EX28DRAFT_2084 at 2110.722 kb on + strand, within EX28DRAFT_2084 at 2110.723 kb on - strand, within EX28DRAFT_2084 at 2111.125 kb on - strand, within EX28DRAFT_2085 at 2111.133 kb on - strand, within EX28DRAFT_2085 at 2111.234 kb on - strand at 2111.251 kb on + strand at 2111.252 kb on - strand at 2111.258 kb on + strand at 2111.259 kb on - strand at 2111.259 kb on - strand at 2111.418 kb on + strand, within EX28DRAFT_2086 at 2111.418 kb on + strand, within EX28DRAFT_2086 at 2111.530 kb on + strand, within EX28DRAFT_2086 at 2111.531 kb on - strand, within EX28DRAFT_2086 at 2111.915 kb on - strand at 2111.936 kb on + strand at 2111.965 kb on - strand at 2111.985 kb on + strand at 2111.986 kb on - strand at 2111.986 kb on - strand at 2111.986 kb on - strand at 2111.986 kb on - strand at 2112.002 kb on + strand at 2112.003 kb on - strand at 2112.025 kb on - strand at 2112.029 kb on + strand at 2112.040 kb on - strand at 2112.040 kb on - strand at 2112.049 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,109,884 - -1.2 2,109,901 - -0.5 2,109,952 + -0.3 2,109,996 + +0.3 2,109,996 + -0.4 2,110,334 + EX28DRAFT_2084 0.37 +0.3 2,110,397 + EX28DRAFT_2084 0.45 -0.0 2,110,639 + EX28DRAFT_2084 0.74 +0.2 2,110,702 + EX28DRAFT_2084 0.82 +0.1 2,110,722 + EX28DRAFT_2084 0.84 -0.1 2,110,722 + EX28DRAFT_2084 0.84 -1.0 2,110,723 - EX28DRAFT_2084 0.84 -1.0 2,111,125 - EX28DRAFT_2085 0.85 +0.8 2,111,133 - EX28DRAFT_2085 0.87 +1.0 2,111,234 - +0.5 2,111,251 + -0.1 2,111,252 - +0.2 2,111,258 + +0.7 2,111,259 - +0.2 2,111,259 - +2.1 2,111,418 + EX28DRAFT_2086 0.28 +0.2 2,111,418 + EX28DRAFT_2086 0.28 +0.4 2,111,530 + EX28DRAFT_2086 0.50 -0.4 2,111,531 - EX28DRAFT_2086 0.50 +1.1 2,111,915 - -1.2 2,111,936 + -0.9 2,111,965 - -1.5 2,111,985 + +0.6 2,111,986 - +0.8 2,111,986 - -0.1 2,111,986 - +0.6 2,111,986 - -0.3 2,112,002 + -0.2 2,112,003 - -0.4 2,112,025 - -0.2 2,112,029 + +0.4 2,112,040 - +0.1 2,112,040 - -0.6 2,112,049 + -1.6
Or see this region's nucleotide sequence