Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2074 and EX28DRAFT_2075 overlap by 8 nucleotides EX28DRAFT_2075 and EX28DRAFT_2076 overlap by 1 nucleotides EX28DRAFT_2076 and EX28DRAFT_2077 are separated by 2 nucleotides EX28DRAFT_2077 and EX28DRAFT_2078 overlap by 1 nucleotides
EX28DRAFT_2074: EX28DRAFT_2074 - type II secretion system protein I, at 2,099,953 to 2,100,336
_2074
EX28DRAFT_2075: EX28DRAFT_2075 - type II secretion system protein H, at 2,100,329 to 2,100,814
_2075
EX28DRAFT_2076: EX28DRAFT_2076 - type II secretion system protein G, at 2,100,814 to 2,101,263
_2076
EX28DRAFT_2077: EX28DRAFT_2077 - type II secretion system protein F, at 2,101,266 to 2,102,474
_2077
EX28DRAFT_2078: EX28DRAFT_2078 - type II secretion system protein E, at 2,102,474 to 2,103,952
_2078
Position (kb)
2101
2102
2103 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2100.330 kb on + strand at 2100.555 kb on - strand, within EX28DRAFT_2075 at 2100.703 kb on + strand, within EX28DRAFT_2075 at 2100.762 kb on - strand, within EX28DRAFT_2075 at 2100.861 kb on + strand, within EX28DRAFT_2076 at 2100.864 kb on + strand, within EX28DRAFT_2076 at 2101.077 kb on - strand, within EX28DRAFT_2076 at 2101.077 kb on - strand, within EX28DRAFT_2076 at 2101.197 kb on + strand, within EX28DRAFT_2076 at 2101.277 kb on + strand at 2101.277 kb on + strand at 2101.284 kb on - strand at 2101.340 kb on + strand at 2101.341 kb on - strand at 2101.345 kb on - strand at 2101.347 kb on + strand at 2101.347 kb on + strand at 2101.382 kb on + strand at 2101.383 kb on - strand at 2101.474 kb on + strand, within EX28DRAFT_2077 at 2101.577 kb on - strand, within EX28DRAFT_2077 at 2101.606 kb on + strand, within EX28DRAFT_2077 at 2101.606 kb on + strand, within EX28DRAFT_2077 at 2101.607 kb on - strand, within EX28DRAFT_2077 at 2101.607 kb on - strand, within EX28DRAFT_2077 at 2101.607 kb on - strand, within EX28DRAFT_2077 at 2101.607 kb on - strand, within EX28DRAFT_2077 at 2101.647 kb on - strand, within EX28DRAFT_2077 at 2101.656 kb on - strand, within EX28DRAFT_2077 at 2101.663 kb on + strand, within EX28DRAFT_2077 at 2101.664 kb on - strand, within EX28DRAFT_2077 at 2101.664 kb on - strand, within EX28DRAFT_2077 at 2101.664 kb on - strand, within EX28DRAFT_2077 at 2101.729 kb on + strand, within EX28DRAFT_2077 at 2101.926 kb on - strand, within EX28DRAFT_2077 at 2101.966 kb on + strand, within EX28DRAFT_2077 at 2102.018 kb on - strand, within EX28DRAFT_2077 at 2102.087 kb on - strand, within EX28DRAFT_2077 at 2102.189 kb on + strand, within EX28DRAFT_2077 at 2102.189 kb on + strand, within EX28DRAFT_2077 at 2102.881 kb on + strand, within EX28DRAFT_2078 at 2103.109 kb on - strand, within EX28DRAFT_2078 at 2103.184 kb on + strand, within EX28DRAFT_2078 at 2103.185 kb on - strand, within EX28DRAFT_2078 at 2103.185 kb on - strand, within EX28DRAFT_2078 at 2103.301 kb on + strand, within EX28DRAFT_2078 at 2103.302 kb on - strand, within EX28DRAFT_2078 at 2103.346 kb on - strand, within EX28DRAFT_2078 at 2103.407 kb on - strand, within EX28DRAFT_2078
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,100,330 + -0.2 2,100,555 - EX28DRAFT_2075 0.47 -0.0 2,100,703 + EX28DRAFT_2075 0.77 +0.5 2,100,762 - EX28DRAFT_2075 0.89 -0.2 2,100,861 + EX28DRAFT_2076 0.10 +0.2 2,100,864 + EX28DRAFT_2076 0.11 +0.1 2,101,077 - EX28DRAFT_2076 0.58 -0.2 2,101,077 - EX28DRAFT_2076 0.58 -0.2 2,101,197 + EX28DRAFT_2076 0.85 +0.4 2,101,277 + +0.9 2,101,277 + -0.1 2,101,284 - -0.4 2,101,340 + -2.4 2,101,341 - -1.9 2,101,345 - -0.8 2,101,347 + -0.2 2,101,347 + +0.5 2,101,382 + +0.1 2,101,383 - +0.6 2,101,474 + EX28DRAFT_2077 0.17 +0.4 2,101,577 - EX28DRAFT_2077 0.26 -0.4 2,101,606 + EX28DRAFT_2077 0.28 -0.9 2,101,606 + EX28DRAFT_2077 0.28 +0.5 2,101,607 - EX28DRAFT_2077 0.28 +0.0 2,101,607 - EX28DRAFT_2077 0.28 +0.7 2,101,607 - EX28DRAFT_2077 0.28 +1.8 2,101,607 - EX28DRAFT_2077 0.28 +0.1 2,101,647 - EX28DRAFT_2077 0.32 -0.1 2,101,656 - EX28DRAFT_2077 0.32 +0.1 2,101,663 + EX28DRAFT_2077 0.33 -0.1 2,101,664 - EX28DRAFT_2077 0.33 +1.2 2,101,664 - EX28DRAFT_2077 0.33 +0.4 2,101,664 - EX28DRAFT_2077 0.33 +0.3 2,101,729 + EX28DRAFT_2077 0.38 -0.6 2,101,926 - EX28DRAFT_2077 0.55 +0.2 2,101,966 + EX28DRAFT_2077 0.58 +0.9 2,102,018 - EX28DRAFT_2077 0.62 +0.4 2,102,087 - EX28DRAFT_2077 0.68 +0.7 2,102,189 + EX28DRAFT_2077 0.76 -0.5 2,102,189 + EX28DRAFT_2077 0.76 -0.2 2,102,881 + EX28DRAFT_2078 0.28 -0.4 2,103,109 - EX28DRAFT_2078 0.43 -0.2 2,103,184 + EX28DRAFT_2078 0.48 +0.6 2,103,185 - EX28DRAFT_2078 0.48 +0.6 2,103,185 - EX28DRAFT_2078 0.48 +0.7 2,103,301 + EX28DRAFT_2078 0.56 +0.2 2,103,302 - EX28DRAFT_2078 0.56 +0.5 2,103,346 - EX28DRAFT_2078 0.59 -0.9 2,103,407 - EX28DRAFT_2078 0.63 +1.9
Or see this region's nucleotide sequence