Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2072

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2071 and EX28DRAFT_2072 are separated by 1 nucleotidesEX28DRAFT_2072 and EX28DRAFT_2073 overlap by 4 nucleotidesEX28DRAFT_2073 and EX28DRAFT_2074 overlap by 8 nucleotides EX28DRAFT_2071: EX28DRAFT_2071 - Type II secretory pathway, component PulL, at 2,097,108 to 2,098,262 _2071 EX28DRAFT_2072: EX28DRAFT_2072 - Type II secretory pathway, component PulK, at 2,098,264 to 2,099,283 _2072 EX28DRAFT_2073: EX28DRAFT_2073 - type II secretion system protein J, at 2,099,280 to 2,099,960 _2073 EX28DRAFT_2074: EX28DRAFT_2074 - type II secretion system protein I, at 2,099,953 to 2,100,336 _2074 Position (kb) 2098 2099 2100Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2097.376 kb on + strand, within EX28DRAFT_2071at 2097.376 kb on + strand, within EX28DRAFT_2071at 2097.377 kb on - strand, within EX28DRAFT_2071at 2097.379 kb on + strand, within EX28DRAFT_2071at 2097.379 kb on + strand, within EX28DRAFT_2071at 2097.415 kb on + strand, within EX28DRAFT_2071at 2097.415 kb on + strand, within EX28DRAFT_2071at 2097.483 kb on - strand, within EX28DRAFT_2071at 2097.678 kb on + strand, within EX28DRAFT_2071at 2097.797 kb on - strand, within EX28DRAFT_2071at 2097.821 kb on + strand, within EX28DRAFT_2071at 2097.822 kb on - strand, within EX28DRAFT_2071at 2098.168 kb on + strandat 2098.169 kb on - strandat 2098.255 kb on - strandat 2098.265 kb on + strandat 2098.265 kb on + strandat 2098.593 kb on + strand, within EX28DRAFT_2072at 2098.594 kb on - strand, within EX28DRAFT_2072at 2098.603 kb on + strand, within EX28DRAFT_2072at 2098.603 kb on + strand, within EX28DRAFT_2072at 2098.799 kb on + strand, within EX28DRAFT_2072at 2098.818 kb on - strand, within EX28DRAFT_2072at 2098.818 kb on - strand, within EX28DRAFT_2072at 2099.003 kb on + strand, within EX28DRAFT_2072at 2099.003 kb on + strand, within EX28DRAFT_2072at 2099.003 kb on + strand, within EX28DRAFT_2072at 2099.004 kb on - strand, within EX28DRAFT_2072at 2099.004 kb on - strand, within EX28DRAFT_2072at 2099.004 kb on - strand, within EX28DRAFT_2072at 2099.007 kb on + strand, within EX28DRAFT_2072at 2099.154 kb on - strand, within EX28DRAFT_2072at 2099.424 kb on - strand, within EX28DRAFT_2073at 2099.424 kb on - strand, within EX28DRAFT_2073at 2099.768 kb on - strand, within EX28DRAFT_2073at 2099.791 kb on + strand, within EX28DRAFT_2073at 2099.792 kb on - strand, within EX28DRAFT_2073at 2099.916 kb on - strandat 2099.916 kb on - strandat 2099.916 kb on - strandat 2100.031 kb on + strand, within EX28DRAFT_2074at 2100.076 kb on - strand, within EX28DRAFT_2074

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,097,376 + EX28DRAFT_2071 0.23 +0.5
2,097,376 + EX28DRAFT_2071 0.23 -0.9
2,097,377 - EX28DRAFT_2071 0.23 +0.2
2,097,379 + EX28DRAFT_2071 0.23 +0.6
2,097,379 + EX28DRAFT_2071 0.23 -2.8
2,097,415 + EX28DRAFT_2071 0.27 -1.0
2,097,415 + EX28DRAFT_2071 0.27 -0.5
2,097,483 - EX28DRAFT_2071 0.32 -0.5
2,097,678 + EX28DRAFT_2071 0.49 -0.4
2,097,797 - EX28DRAFT_2071 0.60 +0.2
2,097,821 + EX28DRAFT_2071 0.62 +0.9
2,097,822 - EX28DRAFT_2071 0.62 -0.1
2,098,168 + +0.1
2,098,169 - -0.6
2,098,255 - +0.2
2,098,265 + -0.3
2,098,265 + -1.2
2,098,593 + EX28DRAFT_2072 0.32 -0.1
2,098,594 - EX28DRAFT_2072 0.32 -0.0
2,098,603 + EX28DRAFT_2072 0.33 +1.3
2,098,603 + EX28DRAFT_2072 0.33 +0.1
2,098,799 + EX28DRAFT_2072 0.52 +0.1
2,098,818 - EX28DRAFT_2072 0.54 -0.4
2,098,818 - EX28DRAFT_2072 0.54 +0.2
2,099,003 + EX28DRAFT_2072 0.72 +0.1
2,099,003 + EX28DRAFT_2072 0.72 +0.4
2,099,003 + EX28DRAFT_2072 0.72 +0.3
2,099,004 - EX28DRAFT_2072 0.73 +0.2
2,099,004 - EX28DRAFT_2072 0.73 +0.6
2,099,004 - EX28DRAFT_2072 0.73 -0.2
2,099,007 + EX28DRAFT_2072 0.73 +0.7
2,099,154 - EX28DRAFT_2072 0.87 -1.7
2,099,424 - EX28DRAFT_2073 0.21 +0.1
2,099,424 - EX28DRAFT_2073 0.21 +1.2
2,099,768 - EX28DRAFT_2073 0.72 +0.7
2,099,791 + EX28DRAFT_2073 0.75 -0.3
2,099,792 - EX28DRAFT_2073 0.75 +0.1
2,099,916 - -0.4
2,099,916 - +1.0
2,099,916 - +2.0
2,100,031 + EX28DRAFT_2074 0.20 -0.6
2,100,076 - EX28DRAFT_2074 0.32 -0.8

Or see this region's nucleotide sequence