Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2071 and EX28DRAFT_2072 are separated by 1 nucleotides EX28DRAFT_2072 and EX28DRAFT_2073 overlap by 4 nucleotides EX28DRAFT_2073 and EX28DRAFT_2074 overlap by 8 nucleotides
EX28DRAFT_2071: EX28DRAFT_2071 - Type II secretory pathway, component PulL, at 2,097,108 to 2,098,262
_2071
EX28DRAFT_2072: EX28DRAFT_2072 - Type II secretory pathway, component PulK, at 2,098,264 to 2,099,283
_2072
EX28DRAFT_2073: EX28DRAFT_2073 - type II secretion system protein J, at 2,099,280 to 2,099,960
_2073
EX28DRAFT_2074: EX28DRAFT_2074 - type II secretion system protein I, at 2,099,953 to 2,100,336
_2074
Position (kb)
2098
2099
2100 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2097.376 kb on + strand, within EX28DRAFT_2071 at 2097.376 kb on + strand, within EX28DRAFT_2071 at 2097.377 kb on - strand, within EX28DRAFT_2071 at 2097.379 kb on + strand, within EX28DRAFT_2071 at 2097.379 kb on + strand, within EX28DRAFT_2071 at 2097.415 kb on + strand, within EX28DRAFT_2071 at 2097.415 kb on + strand, within EX28DRAFT_2071 at 2097.483 kb on - strand, within EX28DRAFT_2071 at 2097.678 kb on + strand, within EX28DRAFT_2071 at 2097.797 kb on - strand, within EX28DRAFT_2071 at 2097.821 kb on + strand, within EX28DRAFT_2071 at 2097.822 kb on - strand, within EX28DRAFT_2071 at 2098.168 kb on + strand at 2098.169 kb on - strand at 2098.255 kb on - strand at 2098.265 kb on + strand at 2098.265 kb on + strand at 2098.593 kb on + strand, within EX28DRAFT_2072 at 2098.594 kb on - strand, within EX28DRAFT_2072 at 2098.603 kb on + strand, within EX28DRAFT_2072 at 2098.603 kb on + strand, within EX28DRAFT_2072 at 2098.799 kb on + strand, within EX28DRAFT_2072 at 2098.818 kb on - strand, within EX28DRAFT_2072 at 2098.818 kb on - strand, within EX28DRAFT_2072 at 2099.003 kb on + strand, within EX28DRAFT_2072 at 2099.003 kb on + strand, within EX28DRAFT_2072 at 2099.003 kb on + strand, within EX28DRAFT_2072 at 2099.004 kb on - strand, within EX28DRAFT_2072 at 2099.004 kb on - strand, within EX28DRAFT_2072 at 2099.004 kb on - strand, within EX28DRAFT_2072 at 2099.007 kb on + strand, within EX28DRAFT_2072 at 2099.154 kb on - strand, within EX28DRAFT_2072 at 2099.424 kb on - strand, within EX28DRAFT_2073 at 2099.424 kb on - strand, within EX28DRAFT_2073 at 2099.768 kb on - strand, within EX28DRAFT_2073 at 2099.791 kb on + strand, within EX28DRAFT_2073 at 2099.792 kb on - strand, within EX28DRAFT_2073 at 2099.916 kb on - strand at 2099.916 kb on - strand at 2099.916 kb on - strand at 2100.031 kb on + strand, within EX28DRAFT_2074 at 2100.076 kb on - strand, within EX28DRAFT_2074
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,097,376 + EX28DRAFT_2071 0.23 +0.5 2,097,376 + EX28DRAFT_2071 0.23 -0.9 2,097,377 - EX28DRAFT_2071 0.23 +0.2 2,097,379 + EX28DRAFT_2071 0.23 +0.6 2,097,379 + EX28DRAFT_2071 0.23 -2.8 2,097,415 + EX28DRAFT_2071 0.27 -1.0 2,097,415 + EX28DRAFT_2071 0.27 -0.5 2,097,483 - EX28DRAFT_2071 0.32 -0.5 2,097,678 + EX28DRAFT_2071 0.49 -0.4 2,097,797 - EX28DRAFT_2071 0.60 +0.2 2,097,821 + EX28DRAFT_2071 0.62 +0.9 2,097,822 - EX28DRAFT_2071 0.62 -0.1 2,098,168 + +0.1 2,098,169 - -0.6 2,098,255 - +0.2 2,098,265 + -0.3 2,098,265 + -1.2 2,098,593 + EX28DRAFT_2072 0.32 -0.1 2,098,594 - EX28DRAFT_2072 0.32 -0.0 2,098,603 + EX28DRAFT_2072 0.33 +1.3 2,098,603 + EX28DRAFT_2072 0.33 +0.1 2,098,799 + EX28DRAFT_2072 0.52 +0.1 2,098,818 - EX28DRAFT_2072 0.54 -0.4 2,098,818 - EX28DRAFT_2072 0.54 +0.2 2,099,003 + EX28DRAFT_2072 0.72 +0.1 2,099,003 + EX28DRAFT_2072 0.72 +0.4 2,099,003 + EX28DRAFT_2072 0.72 +0.3 2,099,004 - EX28DRAFT_2072 0.73 +0.2 2,099,004 - EX28DRAFT_2072 0.73 +0.6 2,099,004 - EX28DRAFT_2072 0.73 -0.2 2,099,007 + EX28DRAFT_2072 0.73 +0.7 2,099,154 - EX28DRAFT_2072 0.87 -1.7 2,099,424 - EX28DRAFT_2073 0.21 +0.1 2,099,424 - EX28DRAFT_2073 0.21 +1.2 2,099,768 - EX28DRAFT_2073 0.72 +0.7 2,099,791 + EX28DRAFT_2073 0.75 -0.3 2,099,792 - EX28DRAFT_2073 0.75 +0.1 2,099,916 - -0.4 2,099,916 - +1.0 2,099,916 - +2.0 2,100,031 + EX28DRAFT_2074 0.20 -0.6 2,100,076 - EX28DRAFT_2074 0.32 -0.8
Or see this region's nucleotide sequence