Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2047

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2046 and EX28DRAFT_2047 are separated by 45 nucleotidesEX28DRAFT_2047 and EX28DRAFT_2048 are separated by 284 nucleotidesEX28DRAFT_2048 and EX28DRAFT_2049 are separated by 71 nucleotides EX28DRAFT_2046: EX28DRAFT_2046 - thiol reductant ABC exporter, CydC subunit, at 2,066,298 to 2,068,019 _2046 EX28DRAFT_2047: EX28DRAFT_2047 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,068,065 to 2,068,769 _2047 EX28DRAFT_2048: EX28DRAFT_2048 - bacterial translation initiation factor 1 (bIF-1), at 2,069,054 to 2,069,272 _2048 EX28DRAFT_2049: EX28DRAFT_2049 - hypothetical protein, at 2,069,344 to 2,069,790 _2049 Position (kb) 2068 2069Strain fitness (log2 ratio) -2 -1 0 1at 2067.922 kb on + strandat 2067.947 kb on + strandat 2067.997 kb on - strandat 2068.017 kb on + strandat 2068.018 kb on - strandat 2068.024 kb on + strandat 2068.024 kb on + strandat 2068.024 kb on + strandat 2068.091 kb on + strandat 2068.091 kb on + strandat 2068.092 kb on - strandat 2068.092 kb on - strandat 2068.181 kb on - strand, within EX28DRAFT_2047at 2068.235 kb on - strand, within EX28DRAFT_2047at 2068.235 kb on - strand, within EX28DRAFT_2047at 2068.324 kb on - strand, within EX28DRAFT_2047at 2068.497 kb on + strand, within EX28DRAFT_2047at 2068.800 kb on + strandat 2068.801 kb on - strandat 2068.802 kb on + strandat 2068.802 kb on + strandat 2068.802 kb on + strandat 2068.803 kb on - strandat 2068.803 kb on - strandat 2068.803 kb on - strandat 2068.806 kb on + strandat 2068.881 kb on - strandat 2068.925 kb on - strandat 2069.300 kb on + strandat 2069.304 kb on + strandat 2069.304 kb on + strandat 2069.334 kb on - strandat 2069.368 kb on + strandat 2069.368 kb on + strandat 2069.368 kb on + strandat 2069.369 kb on - strandat 2069.369 kb on - strandat 2069.369 kb on - strandat 2069.369 kb on - strandat 2069.387 kb on - strandat 2069.412 kb on + strand, within EX28DRAFT_2049at 2069.412 kb on + strand, within EX28DRAFT_2049at 2069.458 kb on - strand, within EX28DRAFT_2049at 2069.458 kb on - strand, within EX28DRAFT_2049at 2069.637 kb on - strand, within EX28DRAFT_2049at 2069.761 kb on - strandat 2069.762 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
2,067,922 + -0.4
2,067,947 + -0.7
2,067,997 - +0.7
2,068,017 + -0.2
2,068,018 - -0.3
2,068,024 + -1.1
2,068,024 + -0.7
2,068,024 + +0.0
2,068,091 + -1.0
2,068,091 + -2.4
2,068,092 - -0.2
2,068,092 - -1.4
2,068,181 - EX28DRAFT_2047 0.16 +0.0
2,068,235 - EX28DRAFT_2047 0.24 -0.3
2,068,235 - EX28DRAFT_2047 0.24 -1.4
2,068,324 - EX28DRAFT_2047 0.37 -2.4
2,068,497 + EX28DRAFT_2047 0.61 -0.4
2,068,800 + -0.8
2,068,801 - -0.8
2,068,802 + -1.3
2,068,802 + -0.8
2,068,802 + -1.4
2,068,803 - -0.1
2,068,803 - -0.1
2,068,803 - +0.9
2,068,806 + -0.9
2,068,881 - +0.4
2,068,925 - -0.4
2,069,300 + -0.5
2,069,304 + -0.5
2,069,304 + -0.1
2,069,334 - -0.1
2,069,368 + -0.7
2,069,368 + -0.2
2,069,368 + +0.7
2,069,369 - +0.8
2,069,369 - +0.3
2,069,369 - -0.1
2,069,369 - -1.5
2,069,387 - +0.3
2,069,412 + EX28DRAFT_2049 0.15 -0.5
2,069,412 + EX28DRAFT_2049 0.15 -0.8
2,069,458 - EX28DRAFT_2049 0.26 +0.2
2,069,458 - EX28DRAFT_2049 0.26 +0.8
2,069,637 - EX28DRAFT_2049 0.66 +0.1
2,069,761 - -0.6
2,069,762 + +0.3

Or see this region's nucleotide sequence