Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2032 and EX28DRAFT_2033 are separated by 204 nucleotides EX28DRAFT_2033 and EX28DRAFT_2034 are separated by 36 nucleotides EX28DRAFT_2034 and EX28DRAFT_2035 are separated by 123 nucleotides
EX28DRAFT_2032: EX28DRAFT_2032 - formate acetyltransferase 1, at 2,045,610 to 2,047,892
_2032
EX28DRAFT_2033: EX28DRAFT_2033 - pyruvate formate-lyase 1-activating enzyme, at 2,048,097 to 2,048,837
_2033
EX28DRAFT_2034: EX28DRAFT_2034 - hypothetical protein, at 2,048,874 to 2,049,395
_2034
EX28DRAFT_2035: EX28DRAFT_2035 - Arabinose efflux permease, at 2,049,519 to 2,050,667
_2035
Position (kb)
2048
2049 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2047.107 kb on + strand, within EX28DRAFT_2032 at 2047.354 kb on + strand, within EX28DRAFT_2032 at 2047.355 kb on - strand, within EX28DRAFT_2032 at 2047.388 kb on + strand, within EX28DRAFT_2032 at 2047.446 kb on + strand, within EX28DRAFT_2032 at 2047.447 kb on - strand, within EX28DRAFT_2032 at 2047.512 kb on - strand, within EX28DRAFT_2032 at 2047.598 kb on + strand, within EX28DRAFT_2032 at 2047.605 kb on + strand, within EX28DRAFT_2032 at 2047.605 kb on + strand, within EX28DRAFT_2032 at 2047.655 kb on + strand, within EX28DRAFT_2032 at 2047.686 kb on + strand at 2047.686 kb on + strand at 2047.686 kb on + strand at 2047.829 kb on + strand at 2047.871 kb on + strand at 2047.872 kb on - strand at 2047.890 kb on + strand at 2047.891 kb on - strand at 2047.997 kb on + strand at 2047.997 kb on + strand at 2047.997 kb on + strand at 2047.997 kb on + strand at 2047.997 kb on + strand at 2047.998 kb on - strand at 2047.998 kb on - strand at 2047.998 kb on - strand at 2047.998 kb on - strand at 2047.999 kb on + strand at 2047.999 kb on + strand at 2048.000 kb on - strand at 2048.004 kb on + strand at 2048.399 kb on + strand, within EX28DRAFT_2033 at 2048.400 kb on - strand, within EX28DRAFT_2033 at 2048.425 kb on + strand, within EX28DRAFT_2033 at 2048.563 kb on - strand, within EX28DRAFT_2033 at 2048.720 kb on + strand, within EX28DRAFT_2033 at 2048.746 kb on - strand, within EX28DRAFT_2033 at 2048.806 kb on + strand at 2048.806 kb on + strand at 2048.806 kb on + strand at 2048.807 kb on - strand at 2048.807 kb on - strand at 2048.815 kb on - strand at 2048.832 kb on + strand at 2048.833 kb on - strand at 2048.833 kb on - strand at 2048.833 kb on - strand at 2048.833 kb on - strand at 2048.833 kb on - strand at 2048.836 kb on - strand at 2048.869 kb on - strand at 2048.869 kb on - strand at 2048.870 kb on + strand at 2048.875 kb on + strand at 2049.038 kb on + strand, within EX28DRAFT_2034 at 2049.083 kb on - strand, within EX28DRAFT_2034 at 2049.165 kb on - strand, within EX28DRAFT_2034 at 2049.212 kb on + strand, within EX28DRAFT_2034 at 2049.212 kb on + strand, within EX28DRAFT_2034 at 2049.213 kb on - strand, within EX28DRAFT_2034 at 2049.222 kb on - strand, within EX28DRAFT_2034 at 2049.389 kb on + strand at 2049.390 kb on - strand at 2049.407 kb on + strand at 2049.408 kb on - strand at 2049.409 kb on + strand at 2049.410 kb on - strand at 2049.457 kb on + strand at 2049.458 kb on - strand at 2049.458 kb on - strand at 2049.458 kb on - strand at 2049.458 kb on - strand at 2049.461 kb on + strand at 2049.461 kb on + strand at 2049.470 kb on + strand at 2049.471 kb on - strand at 2049.512 kb on + strand at 2049.513 kb on - strand at 2049.570 kb on + strand at 2049.582 kb on - strand at 2049.589 kb on - strand at 2049.606 kb on - strand at 2049.613 kb on - strand at 2049.626 kb on - strand at 2049.626 kb on - strand at 2049.648 kb on - strand, within EX28DRAFT_2035 at 2049.660 kb on + strand, within EX28DRAFT_2035 at 2049.661 kb on - strand, within EX28DRAFT_2035 at 2049.677 kb on + strand, within EX28DRAFT_2035 at 2049.678 kb on - strand, within EX28DRAFT_2035 at 2049.678 kb on - strand, within EX28DRAFT_2035 at 2049.679 kb on + strand, within EX28DRAFT_2035 at 2049.679 kb on + strand, within EX28DRAFT_2035 at 2049.680 kb on - strand, within EX28DRAFT_2035 at 2049.680 kb on - strand, within EX28DRAFT_2035 at 2049.680 kb on - strand, within EX28DRAFT_2035 at 2049.680 kb on - strand, within EX28DRAFT_2035
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,047,107 + EX28DRAFT_2032 0.66 -0.2 2,047,354 + EX28DRAFT_2032 0.76 -0.1 2,047,355 - EX28DRAFT_2032 0.76 -0.7 2,047,388 + EX28DRAFT_2032 0.78 -0.4 2,047,446 + EX28DRAFT_2032 0.80 +0.1 2,047,447 - EX28DRAFT_2032 0.80 +0.4 2,047,512 - EX28DRAFT_2032 0.83 -0.9 2,047,598 + EX28DRAFT_2032 0.87 +0.4 2,047,605 + EX28DRAFT_2032 0.87 +0.5 2,047,605 + EX28DRAFT_2032 0.87 +0.1 2,047,655 + EX28DRAFT_2032 0.90 +1.3 2,047,686 + +0.0 2,047,686 + -0.6 2,047,686 + +0.3 2,047,829 + +1.0 2,047,871 + +1.9 2,047,872 - +0.1 2,047,890 + -1.0 2,047,891 - +1.2 2,047,997 + +1.6 2,047,997 + -0.6 2,047,997 + +0.4 2,047,997 + +0.7 2,047,997 + -0.5 2,047,998 - -2.4 2,047,998 - -0.1 2,047,998 - -0.1 2,047,998 - -0.1 2,047,999 + +0.9 2,047,999 + +1.8 2,048,000 - -0.3 2,048,004 + +0.4 2,048,399 + EX28DRAFT_2033 0.41 +1.0 2,048,400 - EX28DRAFT_2033 0.41 +0.1 2,048,425 + EX28DRAFT_2033 0.44 +0.7 2,048,563 - EX28DRAFT_2033 0.63 +2.7 2,048,720 + EX28DRAFT_2033 0.84 +0.1 2,048,746 - EX28DRAFT_2033 0.88 +0.6 2,048,806 + +0.2 2,048,806 + -0.3 2,048,806 + -0.2 2,048,807 - -2.4 2,048,807 - +1.1 2,048,815 - +0.6 2,048,832 + -0.4 2,048,833 - -0.5 2,048,833 - -3.0 2,048,833 - +0.1 2,048,833 - +1.8 2,048,833 - -0.2 2,048,836 - -0.1 2,048,869 - -0.7 2,048,869 - +0.8 2,048,870 + -2.4 2,048,875 + -0.9 2,049,038 + EX28DRAFT_2034 0.31 +0.1 2,049,083 - EX28DRAFT_2034 0.40 +0.7 2,049,165 - EX28DRAFT_2034 0.56 -0.3 2,049,212 + EX28DRAFT_2034 0.65 -0.4 2,049,212 + EX28DRAFT_2034 0.65 -1.1 2,049,213 - EX28DRAFT_2034 0.65 -0.9 2,049,222 - EX28DRAFT_2034 0.67 -0.6 2,049,389 + +0.4 2,049,390 - +1.1 2,049,407 + -1.7 2,049,408 - -0.4 2,049,409 + +0.3 2,049,410 - +0.2 2,049,457 + +0.3 2,049,458 - -0.2 2,049,458 - +0.2 2,049,458 - -0.1 2,049,458 - -1.2 2,049,461 + -0.6 2,049,461 + -2.3 2,049,470 + +0.9 2,049,471 - -0.0 2,049,512 + +0.4 2,049,513 - +0.4 2,049,570 + -0.2 2,049,582 - -0.2 2,049,589 - -0.1 2,049,606 - -0.1 2,049,613 - -0.2 2,049,626 - +0.5 2,049,626 - -1.4 2,049,648 - EX28DRAFT_2035 0.11 -2.1 2,049,660 + EX28DRAFT_2035 0.12 -0.0 2,049,661 - EX28DRAFT_2035 0.12 -0.7 2,049,677 + EX28DRAFT_2035 0.14 -0.1 2,049,678 - EX28DRAFT_2035 0.14 -0.3 2,049,678 - EX28DRAFT_2035 0.14 -0.1 2,049,679 + EX28DRAFT_2035 0.14 -0.9 2,049,679 + EX28DRAFT_2035 0.14 +0.4 2,049,680 - EX28DRAFT_2035 0.14 -0.0 2,049,680 - EX28DRAFT_2035 0.14 +0.0 2,049,680 - EX28DRAFT_2035 0.14 -1.3 2,049,680 - EX28DRAFT_2035 0.14 -0.0
Or see this region's nucleotide sequence