Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1999 and EX28DRAFT_2000 overlap by 8 nucleotides EX28DRAFT_2000 and EX28DRAFT_2001 overlap by 4 nucleotides EX28DRAFT_2001 and EX28DRAFT_2002 are separated by 9 nucleotides EX28DRAFT_2002 and EX28DRAFT_2003 overlap by 4 nucleotides
EX28DRAFT_1999: EX28DRAFT_1999 - FMN reductase, SsuE family, at 2,002,894 to 2,003,469
_1999
EX28DRAFT_2000: EX28DRAFT_2000 - ABC transporter, substrate-binding protein, aliphatic sulfonates family, at 2,003,462 to 2,004,424
_2000
EX28DRAFT_2001: EX28DRAFT_2001 - alkanesulfonate monooxygenase (EC 1.14.14.5), at 2,004,421 to 2,005,566
_2001
EX28DRAFT_2002: EX28DRAFT_2002 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,005,576 to 2,006,367
_2002
EX28DRAFT_2003: EX28DRAFT_2003 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,006,364 to 2,007,134
_2003
Position (kb)
2004
2005
2006 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2003.467 kb on + strand at 2003.468 kb on - strand at 2003.509 kb on + strand at 2003.509 kb on + strand at 2003.762 kb on + strand, within EX28DRAFT_2000 at 2003.762 kb on + strand, within EX28DRAFT_2000 at 2003.763 kb on - strand, within EX28DRAFT_2000 at 2003.763 kb on - strand, within EX28DRAFT_2000 at 2003.763 kb on - strand, within EX28DRAFT_2000 at 2003.827 kb on + strand, within EX28DRAFT_2000 at 2003.827 kb on + strand, within EX28DRAFT_2000 at 2003.828 kb on - strand, within EX28DRAFT_2000 at 2003.845 kb on + strand, within EX28DRAFT_2000 at 2004.116 kb on + strand, within EX28DRAFT_2000 at 2004.140 kb on - strand, within EX28DRAFT_2000 at 2004.157 kb on + strand, within EX28DRAFT_2000 at 2004.157 kb on + strand, within EX28DRAFT_2000 at 2004.257 kb on + strand, within EX28DRAFT_2000 at 2004.258 kb on - strand, within EX28DRAFT_2000 at 2004.258 kb on - strand, within EX28DRAFT_2000 at 2004.286 kb on + strand, within EX28DRAFT_2000 at 2004.287 kb on - strand, within EX28DRAFT_2000 at 2004.341 kb on + strand at 2004.374 kb on - strand at 2004.416 kb on - strand at 2004.416 kb on - strand at 2004.446 kb on + strand at 2004.469 kb on + strand at 2004.470 kb on - strand at 2004.470 kb on - strand at 2004.470 kb on - strand at 2004.470 kb on - strand at 2004.796 kb on - strand, within EX28DRAFT_2001 at 2004.805 kb on + strand, within EX28DRAFT_2001 at 2004.882 kb on + strand, within EX28DRAFT_2001 at 2004.882 kb on + strand, within EX28DRAFT_2001 at 2004.883 kb on - strand, within EX28DRAFT_2001 at 2004.908 kb on - strand, within EX28DRAFT_2001 at 2004.908 kb on - strand, within EX28DRAFT_2001 at 2004.944 kb on - strand, within EX28DRAFT_2001 at 2005.000 kb on + strand, within EX28DRAFT_2001 at 2005.401 kb on + strand, within EX28DRAFT_2001 at 2005.565 kb on - strand at 2005.712 kb on + strand, within EX28DRAFT_2002 at 2005.993 kb on + strand, within EX28DRAFT_2002 at 2005.994 kb on - strand, within EX28DRAFT_2002 at 2006.063 kb on + strand, within EX28DRAFT_2002 at 2006.082 kb on + strand, within EX28DRAFT_2002 at 2006.083 kb on - strand, within EX28DRAFT_2002 at 2006.084 kb on + strand, within EX28DRAFT_2002 at 2006.085 kb on - strand, within EX28DRAFT_2002 at 2006.118 kb on + strand, within EX28DRAFT_2002 at 2006.199 kb on - strand, within EX28DRAFT_2002 at 2006.199 kb on - strand, within EX28DRAFT_2002 at 2006.266 kb on + strand, within EX28DRAFT_2002 at 2006.267 kb on - strand, within EX28DRAFT_2002 at 2006.341 kb on + strand at 2006.341 kb on + strand at 2006.341 kb on + strand at 2006.341 kb on + strand at 2006.370 kb on - strand at 2006.370 kb on - strand at 2006.462 kb on + strand, within EX28DRAFT_2003
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,003,467 + +0.0 2,003,468 - +1.4 2,003,509 + -2.0 2,003,509 + +0.3 2,003,762 + EX28DRAFT_2000 0.31 -0.3 2,003,762 + EX28DRAFT_2000 0.31 -0.3 2,003,763 - EX28DRAFT_2000 0.31 -0.7 2,003,763 - EX28DRAFT_2000 0.31 -0.3 2,003,763 - EX28DRAFT_2000 0.31 -1.0 2,003,827 + EX28DRAFT_2000 0.38 +0.1 2,003,827 + EX28DRAFT_2000 0.38 +0.1 2,003,828 - EX28DRAFT_2000 0.38 -1.2 2,003,845 + EX28DRAFT_2000 0.40 +0.2 2,004,116 + EX28DRAFT_2000 0.68 +0.4 2,004,140 - EX28DRAFT_2000 0.70 -0.0 2,004,157 + EX28DRAFT_2000 0.72 +0.1 2,004,157 + EX28DRAFT_2000 0.72 -0.6 2,004,257 + EX28DRAFT_2000 0.83 +0.4 2,004,258 - EX28DRAFT_2000 0.83 +0.1 2,004,258 - EX28DRAFT_2000 0.83 +0.2 2,004,286 + EX28DRAFT_2000 0.86 +0.1 2,004,287 - EX28DRAFT_2000 0.86 +1.0 2,004,341 + -0.2 2,004,374 - +0.5 2,004,416 - +2.1 2,004,416 - -0.3 2,004,446 + -0.4 2,004,469 + +1.3 2,004,470 - +0.1 2,004,470 - +0.5 2,004,470 - -0.1 2,004,470 - +0.1 2,004,796 - EX28DRAFT_2001 0.33 -0.4 2,004,805 + EX28DRAFT_2001 0.34 +0.7 2,004,882 + EX28DRAFT_2001 0.40 +1.0 2,004,882 + EX28DRAFT_2001 0.40 +0.5 2,004,883 - EX28DRAFT_2001 0.40 -0.0 2,004,908 - EX28DRAFT_2001 0.42 +1.0 2,004,908 - EX28DRAFT_2001 0.42 -2.3 2,004,944 - EX28DRAFT_2001 0.46 +0.3 2,005,000 + EX28DRAFT_2001 0.51 -0.1 2,005,401 + EX28DRAFT_2001 0.86 +0.1 2,005,565 - +0.3 2,005,712 + EX28DRAFT_2002 0.17 -0.5 2,005,993 + EX28DRAFT_2002 0.53 +0.3 2,005,994 - EX28DRAFT_2002 0.53 +0.4 2,006,063 + EX28DRAFT_2002 0.61 +1.1 2,006,082 + EX28DRAFT_2002 0.64 -0.1 2,006,083 - EX28DRAFT_2002 0.64 +0.1 2,006,084 + EX28DRAFT_2002 0.64 +1.0 2,006,085 - EX28DRAFT_2002 0.64 -0.2 2,006,118 + EX28DRAFT_2002 0.68 -1.1 2,006,199 - EX28DRAFT_2002 0.79 -1.1 2,006,199 - EX28DRAFT_2002 0.79 -0.4 2,006,266 + EX28DRAFT_2002 0.87 -0.0 2,006,267 - EX28DRAFT_2002 0.87 -0.6 2,006,341 + +0.7 2,006,341 + -1.1 2,006,341 + -0.9 2,006,341 + +0.1 2,006,370 - -0.3 2,006,370 - +0.1 2,006,462 + EX28DRAFT_2003 0.13 +0.8
Or see this region's nucleotide sequence