Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1985 and EX28DRAFT_1986 are separated by 354 nucleotides EX28DRAFT_1986 and EX28DRAFT_1987 are separated by 63 nucleotides EX28DRAFT_1987 and EX28DRAFT_1988 are separated by 186 nucleotides
EX28DRAFT_1985: EX28DRAFT_1985 - cell division inhibitor SulA, at 1,986,701 to 1,987,264
_1985
EX28DRAFT_1986: EX28DRAFT_1986 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 1,987,619 to 1,988,674
_1986
EX28DRAFT_1987: EX28DRAFT_1987 - Uncharacterized protein conserved in bacteria, at 1,988,738 to 1,989,190
_1987
EX28DRAFT_1988: EX28DRAFT_1988 - Predicted ATP-dependent protease, at 1,989,377 to 1,991,137
_1988
Position (kb) 1987
1988
1989 Strain fitness (log2 ratio) -2
-1
0
1 at 1986.700 kb on + strand at 1986.701 kb on - strand at 1986.701 kb on - strand at 1986.701 kb on - strand at 1986.706 kb on + strand at 1986.771 kb on - strand, within EX28DRAFT_1985 at 1986.915 kb on + strand, within EX28DRAFT_1985 at 1986.916 kb on - strand, within EX28DRAFT_1985 at 1986.956 kb on - strand, within EX28DRAFT_1985 at 1987.074 kb on + strand, within EX28DRAFT_1985 at 1987.088 kb on + strand, within EX28DRAFT_1985 at 1987.088 kb on + strand, within EX28DRAFT_1985 at 1987.236 kb on + strand at 1987.314 kb on - strand at 1987.413 kb on - strand at 1987.529 kb on + strand at 1987.995 kb on + strand, within EX28DRAFT_1986 at 1988.358 kb on - strand, within EX28DRAFT_1986 at 1988.656 kb on - strand at 1988.672 kb on + strand at 1988.672 kb on + strand at 1988.687 kb on + strand at 1988.687 kb on + strand at 1988.716 kb on - strand at 1988.796 kb on + strand, within EX28DRAFT_1987 at 1988.797 kb on - strand, within EX28DRAFT_1987 at 1988.806 kb on + strand, within EX28DRAFT_1987 at 1988.807 kb on - strand, within EX28DRAFT_1987 at 1988.807 kb on - strand, within EX28DRAFT_1987 at 1988.991 kb on - strand, within EX28DRAFT_1987 at 1989.142 kb on - strand, within EX28DRAFT_1987 at 1989.205 kb on + strand at 1989.337 kb on + strand at 1989.340 kb on - strand at 1989.340 kb on - strand at 1989.352 kb on + strand at 1989.385 kb on + strand at 1989.582 kb on - strand, within EX28DRAFT_1988 at 1989.656 kb on - strand, within EX28DRAFT_1988
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,986,700 + -0.2 1,986,701 - -0.4 1,986,701 - +0.5 1,986,701 - -0.9 1,986,706 + -0.1 1,986,771 - EX28DRAFT_1985 0.12 -0.9 1,986,915 + EX28DRAFT_1985 0.38 +0.0 1,986,916 - EX28DRAFT_1985 0.38 -0.4 1,986,956 - EX28DRAFT_1985 0.45 -0.5 1,987,074 + EX28DRAFT_1985 0.66 -0.3 1,987,088 + EX28DRAFT_1985 0.69 +0.5 1,987,088 + EX28DRAFT_1985 0.69 -1.1 1,987,236 + +0.8 1,987,314 - +0.3 1,987,413 - +0.6 1,987,529 + +0.5 1,987,995 + EX28DRAFT_1986 0.36 -1.6 1,988,358 - EX28DRAFT_1986 0.70 -2.3 1,988,656 - -0.5 1,988,672 + +0.4 1,988,672 + -0.3 1,988,687 + -0.5 1,988,687 + -0.8 1,988,716 - -0.5 1,988,796 + EX28DRAFT_1987 0.13 +0.5 1,988,797 - EX28DRAFT_1987 0.13 -0.4 1,988,806 + EX28DRAFT_1987 0.15 +1.6 1,988,807 - EX28DRAFT_1987 0.15 -0.2 1,988,807 - EX28DRAFT_1987 0.15 -0.6 1,988,991 - EX28DRAFT_1987 0.56 -0.8 1,989,142 - EX28DRAFT_1987 0.89 -2.3 1,989,205 + -0.5 1,989,337 + +0.7 1,989,340 - -1.6 1,989,340 - -2.2 1,989,352 + -0.5 1,989,385 + -1.3 1,989,582 - EX28DRAFT_1988 0.12 -1.2 1,989,656 - EX28DRAFT_1988 0.16 -0.1
Or see this region's nucleotide sequence