Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1976 and EX28DRAFT_1977 are separated by 60 nucleotides EX28DRAFT_1977 and EX28DRAFT_1978 are separated by 35 nucleotides EX28DRAFT_1978 and EX28DRAFT_1979 are separated by 173 nucleotides
EX28DRAFT_1976: EX28DRAFT_1976 - Predicted SAM-dependent methyltransferases, at 1,977,698 to 1,978,888
_1976
EX28DRAFT_1977: EX28DRAFT_1977 - hemimethylated DNA binding domain, at 1,978,949 to 1,979,266
_1977
EX28DRAFT_1978: EX28DRAFT_1978 - Predicted CoA-binding protein, at 1,979,302 to 1,979,715
_1978
EX28DRAFT_1979: EX28DRAFT_1979 - Uncharacterized protein conserved in bacteria, at 1,979,889 to 1,980,551
_1979
Position (kb)
1978
1979
1980 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1978.072 kb on - strand, within EX28DRAFT_1976 at 1978.310 kb on + strand, within EX28DRAFT_1976 at 1978.311 kb on - strand, within EX28DRAFT_1976 at 1978.349 kb on + strand, within EX28DRAFT_1976 at 1978.386 kb on - strand, within EX28DRAFT_1976 at 1978.435 kb on - strand, within EX28DRAFT_1976 at 1978.435 kb on - strand, within EX28DRAFT_1976 at 1978.552 kb on + strand, within EX28DRAFT_1976 at 1978.552 kb on + strand, within EX28DRAFT_1976 at 1978.552 kb on + strand, within EX28DRAFT_1976 at 1978.552 kb on + strand, within EX28DRAFT_1976 at 1978.552 kb on + strand, within EX28DRAFT_1976 at 1978.553 kb on - strand, within EX28DRAFT_1976 at 1978.556 kb on + strand, within EX28DRAFT_1976 at 1978.557 kb on - strand, within EX28DRAFT_1976 at 1978.652 kb on - strand, within EX28DRAFT_1976 at 1978.652 kb on - strand, within EX28DRAFT_1976 at 1978.652 kb on - strand, within EX28DRAFT_1976 at 1978.657 kb on + strand, within EX28DRAFT_1976 at 1978.740 kb on + strand, within EX28DRAFT_1976 at 1978.740 kb on + strand, within EX28DRAFT_1976 at 1978.770 kb on + strand at 1978.770 kb on + strand at 1978.770 kb on + strand at 1978.770 kb on + strand at 1978.771 kb on - strand at 1978.796 kb on - strand at 1978.797 kb on + strand at 1978.797 kb on + strand at 1978.797 kb on + strand at 1978.886 kb on + strand at 1978.886 kb on + strand at 1978.886 kb on + strand at 1978.903 kb on + strand at 1978.916 kb on + strand at 1978.916 kb on + strand at 1978.917 kb on - strand at 1978.923 kb on + strand at 1978.923 kb on + strand at 1978.923 kb on + strand at 1978.923 kb on + strand at 1978.924 kb on - strand at 1978.928 kb on - strand at 1979.147 kb on + strand, within EX28DRAFT_1977 at 1979.148 kb on - strand, within EX28DRAFT_1977 at 1979.265 kb on - strand at 1979.265 kb on - strand at 1979.534 kb on + strand, within EX28DRAFT_1978 at 1979.612 kb on + strand, within EX28DRAFT_1978 at 1979.700 kb on + strand at 1979.778 kb on + strand at 1979.807 kb on + strand at 1979.807 kb on + strand at 1979.808 kb on - strand at 1979.808 kb on - strand at 1979.808 kb on - strand at 1979.808 kb on - strand at 1979.813 kb on + strand at 1979.813 kb on + strand at 1979.814 kb on - strand at 1979.814 kb on - strand at 1979.814 kb on - strand at 1979.814 kb on - strand at 1979.815 kb on + strand at 1979.816 kb on - strand at 1979.816 kb on - strand at 1979.816 kb on - strand at 1979.816 kb on - strand at 1979.816 kb on - strand at 1979.816 kb on - strand at 1979.889 kb on - strand at 1979.986 kb on + strand, within EX28DRAFT_1979 at 1979.987 kb on - strand, within EX28DRAFT_1979 at 1980.117 kb on + strand, within EX28DRAFT_1979 at 1980.117 kb on + strand, within EX28DRAFT_1979 at 1980.117 kb on + strand, within EX28DRAFT_1979 at 1980.118 kb on - strand, within EX28DRAFT_1979 at 1980.118 kb on - strand, within EX28DRAFT_1979 at 1980.118 kb on - strand, within EX28DRAFT_1979 at 1980.118 kb on - strand, within EX28DRAFT_1979 at 1980.146 kb on + strand, within EX28DRAFT_1979
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,978,072 - EX28DRAFT_1976 0.31 +0.2 1,978,310 + EX28DRAFT_1976 0.51 +0.4 1,978,311 - EX28DRAFT_1976 0.51 +0.1 1,978,349 + EX28DRAFT_1976 0.55 +0.5 1,978,386 - EX28DRAFT_1976 0.58 -0.4 1,978,435 - EX28DRAFT_1976 0.62 +0.1 1,978,435 - EX28DRAFT_1976 0.62 -0.2 1,978,552 + EX28DRAFT_1976 0.72 -0.3 1,978,552 + EX28DRAFT_1976 0.72 +0.3 1,978,552 + EX28DRAFT_1976 0.72 +0.3 1,978,552 + EX28DRAFT_1976 0.72 +0.4 1,978,552 + EX28DRAFT_1976 0.72 -0.1 1,978,553 - EX28DRAFT_1976 0.72 +0.2 1,978,556 + EX28DRAFT_1976 0.72 +0.3 1,978,557 - EX28DRAFT_1976 0.72 +0.3 1,978,652 - EX28DRAFT_1976 0.80 -1.6 1,978,652 - EX28DRAFT_1976 0.80 -0.8 1,978,652 - EX28DRAFT_1976 0.80 -1.0 1,978,657 + EX28DRAFT_1976 0.81 +2.1 1,978,740 + EX28DRAFT_1976 0.87 -0.2 1,978,740 + EX28DRAFT_1976 0.87 -0.9 1,978,770 + -0.9 1,978,770 + +0.2 1,978,770 + -0.8 1,978,770 + +0.5 1,978,771 - +0.8 1,978,796 - -0.7 1,978,797 + -0.9 1,978,797 + +1.1 1,978,797 + -0.2 1,978,886 + +0.8 1,978,886 + -0.2 1,978,886 + +0.5 1,978,903 + +0.4 1,978,916 + +0.5 1,978,916 + -0.2 1,978,917 - +0.2 1,978,923 + -1.6 1,978,923 + -0.4 1,978,923 + -0.4 1,978,923 + +1.4 1,978,924 - -1.1 1,978,928 - -0.4 1,979,147 + EX28DRAFT_1977 0.62 -0.1 1,979,148 - EX28DRAFT_1977 0.63 -2.3 1,979,265 - -1.2 1,979,265 - -1.3 1,979,534 + EX28DRAFT_1978 0.56 -0.3 1,979,612 + EX28DRAFT_1978 0.75 +0.1 1,979,700 + -0.8 1,979,778 + +0.7 1,979,807 + +0.3 1,979,807 + -0.4 1,979,808 - +0.5 1,979,808 - +0.6 1,979,808 - -0.7 1,979,808 - +0.7 1,979,813 + -0.8 1,979,813 + -0.5 1,979,814 - +0.7 1,979,814 - +0.3 1,979,814 - -0.1 1,979,814 - +0.1 1,979,815 + +0.4 1,979,816 - +0.8 1,979,816 - -0.2 1,979,816 - +0.5 1,979,816 - +0.5 1,979,816 - +0.1 1,979,816 - -1.8 1,979,889 - +0.0 1,979,986 + EX28DRAFT_1979 0.15 -0.0 1,979,987 - EX28DRAFT_1979 0.15 +0.1 1,980,117 + EX28DRAFT_1979 0.34 +1.0 1,980,117 + EX28DRAFT_1979 0.34 -0.4 1,980,117 + EX28DRAFT_1979 0.34 -1.1 1,980,118 - EX28DRAFT_1979 0.35 +0.9 1,980,118 - EX28DRAFT_1979 0.35 -0.4 1,980,118 - EX28DRAFT_1979 0.35 +0.2 1,980,118 - EX28DRAFT_1979 0.35 -0.1 1,980,146 + EX28DRAFT_1979 0.39 -0.0
Or see this region's nucleotide sequence