Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1968

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1967 and EX28DRAFT_1968 are separated by 75 nucleotidesEX28DRAFT_1968 and EX28DRAFT_1969 are separated by 72 nucleotides EX28DRAFT_1967: EX28DRAFT_1967 - hypothetical protein, at 1,969,643 to 1,970,386 _1967 EX28DRAFT_1968: EX28DRAFT_1968 - CS1 type fimbrial major subunit, at 1,970,462 to 1,970,968 _1968 EX28DRAFT_1969: EX28DRAFT_1969 - hypothetical protein, at 1,971,041 to 1,973,758 _1969 Position (kb) 1970 1971Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1969.658 kb on - strandat 1969.683 kb on - strandat 1969.846 kb on + strand, within EX28DRAFT_1967at 1970.038 kb on + strand, within EX28DRAFT_1967at 1970.170 kb on - strand, within EX28DRAFT_1967at 1970.286 kb on + strand, within EX28DRAFT_1967at 1970.321 kb on - strandat 1970.370 kb on + strandat 1970.445 kb on + strandat 1970.449 kb on + strandat 1970.458 kb on - strandat 1970.467 kb on + strandat 1970.468 kb on - strandat 1970.477 kb on - strandat 1970.539 kb on + strand, within EX28DRAFT_1968at 1970.540 kb on - strand, within EX28DRAFT_1968at 1970.576 kb on - strand, within EX28DRAFT_1968at 1970.625 kb on - strand, within EX28DRAFT_1968at 1970.625 kb on - strand, within EX28DRAFT_1968at 1970.670 kb on + strand, within EX28DRAFT_1968at 1970.671 kb on - strand, within EX28DRAFT_1968at 1970.671 kb on - strand, within EX28DRAFT_1968at 1970.671 kb on - strand, within EX28DRAFT_1968at 1970.671 kb on - strand, within EX28DRAFT_1968at 1970.807 kb on + strand, within EX28DRAFT_1968at 1970.807 kb on + strand, within EX28DRAFT_1968at 1970.808 kb on - strand, within EX28DRAFT_1968at 1970.808 kb on - strand, within EX28DRAFT_1968at 1970.809 kb on + strand, within EX28DRAFT_1968at 1970.809 kb on + strand, within EX28DRAFT_1968at 1970.909 kb on + strand, within EX28DRAFT_1968at 1970.981 kb on + strandat 1970.982 kb on - strandat 1970.982 kb on - strandat 1971.179 kb on + strandat 1971.255 kb on + strandat 1971.255 kb on + strandat 1971.387 kb on - strand, within EX28DRAFT_1969at 1971.392 kb on - strand, within EX28DRAFT_1969at 1971.392 kb on - strand, within EX28DRAFT_1969at 1971.394 kb on + strand, within EX28DRAFT_1969at 1971.439 kb on + strand, within EX28DRAFT_1969at 1971.439 kb on + strand, within EX28DRAFT_1969at 1971.440 kb on - strand, within EX28DRAFT_1969at 1971.620 kb on + strand, within EX28DRAFT_1969at 1971.621 kb on - strand, within EX28DRAFT_1969at 1971.625 kb on + strand, within EX28DRAFT_1969at 1971.712 kb on + strand, within EX28DRAFT_1969at 1971.725 kb on + strand, within EX28DRAFT_1969at 1971.726 kb on - strand, within EX28DRAFT_1969at 1971.726 kb on - strand, within EX28DRAFT_1969at 1971.728 kb on + strand, within EX28DRAFT_1969at 1971.728 kb on + strand, within EX28DRAFT_1969at 1971.729 kb on - strand, within EX28DRAFT_1969at 1971.729 kb on - strand, within EX28DRAFT_1969at 1971.729 kb on - strand, within EX28DRAFT_1969at 1971.784 kb on + strand, within EX28DRAFT_1969at 1971.785 kb on - strand, within EX28DRAFT_1969at 1971.954 kb on - strand, within EX28DRAFT_1969

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,969,658 - -0.4
1,969,683 - -0.3
1,969,846 + EX28DRAFT_1967 0.27 -1.1
1,970,038 + EX28DRAFT_1967 0.53 -0.1
1,970,170 - EX28DRAFT_1967 0.71 +0.0
1,970,286 + EX28DRAFT_1967 0.86 +0.0
1,970,321 - -2.7
1,970,370 + +0.1
1,970,445 + +0.2
1,970,449 + -0.5
1,970,458 - -0.4
1,970,467 + -2.4
1,970,468 - -0.8
1,970,477 - +0.3
1,970,539 + EX28DRAFT_1968 0.15 -1.3
1,970,540 - EX28DRAFT_1968 0.15 -0.5
1,970,576 - EX28DRAFT_1968 0.22 -1.4
1,970,625 - EX28DRAFT_1968 0.32 -0.7
1,970,625 - EX28DRAFT_1968 0.32 +0.5
1,970,670 + EX28DRAFT_1968 0.41 -1.0
1,970,671 - EX28DRAFT_1968 0.41 -0.2
1,970,671 - EX28DRAFT_1968 0.41 -3.9
1,970,671 - EX28DRAFT_1968 0.41 +0.1
1,970,671 - EX28DRAFT_1968 0.41 -0.8
1,970,807 + EX28DRAFT_1968 0.68 -0.1
1,970,807 + EX28DRAFT_1968 0.68 +0.0
1,970,808 - EX28DRAFT_1968 0.68 -0.2
1,970,808 - EX28DRAFT_1968 0.68 +1.0
1,970,809 + EX28DRAFT_1968 0.68 -1.1
1,970,809 + EX28DRAFT_1968 0.68 -0.0
1,970,909 + EX28DRAFT_1968 0.88 +0.5
1,970,981 + -0.4
1,970,982 - -0.2
1,970,982 - +0.8
1,971,179 + +0.1
1,971,255 + +0.7
1,971,255 + +0.1
1,971,387 - EX28DRAFT_1969 0.13 +1.0
1,971,392 - EX28DRAFT_1969 0.13 +0.2
1,971,392 - EX28DRAFT_1969 0.13 +0.9
1,971,394 + EX28DRAFT_1969 0.13 -0.1
1,971,439 + EX28DRAFT_1969 0.15 +0.3
1,971,439 + EX28DRAFT_1969 0.15 +0.2
1,971,440 - EX28DRAFT_1969 0.15 -0.0
1,971,620 + EX28DRAFT_1969 0.21 +0.4
1,971,621 - EX28DRAFT_1969 0.21 +0.1
1,971,625 + EX28DRAFT_1969 0.21 -3.4
1,971,712 + EX28DRAFT_1969 0.25 -1.6
1,971,725 + EX28DRAFT_1969 0.25 -0.1
1,971,726 - EX28DRAFT_1969 0.25 -0.6
1,971,726 - EX28DRAFT_1969 0.25 -1.4
1,971,728 + EX28DRAFT_1969 0.25 +0.1
1,971,728 + EX28DRAFT_1969 0.25 +0.7
1,971,729 - EX28DRAFT_1969 0.25 -0.5
1,971,729 - EX28DRAFT_1969 0.25 +0.5
1,971,729 - EX28DRAFT_1969 0.25 +1.0
1,971,784 + EX28DRAFT_1969 0.27 -1.1
1,971,785 - EX28DRAFT_1969 0.27 -0.7
1,971,954 - EX28DRAFT_1969 0.34 +0.0

Or see this region's nucleotide sequence