Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1958

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1957 and EX28DRAFT_1958 overlap by 4 nucleotidesEX28DRAFT_1958 and EX28DRAFT_1959 are separated by 17 nucleotidesEX28DRAFT_1959 and EX28DRAFT_1960 are separated by 252 nucleotides EX28DRAFT_1957: EX28DRAFT_1957 - Predicted membrane protein involved in D-alanine export, at 1,960,728 to 1,961,846 _1957 EX28DRAFT_1958: EX28DRAFT_1958 - AMP-binding enzyme C-terminal domain/AMP-binding enzyme, at 1,961,843 to 1,963,276 _1958 EX28DRAFT_1959: EX28DRAFT_1959 - Acyl carrier protein, at 1,963,294 to 1,963,512 _1959 EX28DRAFT_1960: EX28DRAFT_1960 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,963,765 to 1,964,601 _1960 Position (kb) 1961 1962 1963 1964Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1960.861 kb on - strand, within EX28DRAFT_1957at 1960.862 kb on + strand, within EX28DRAFT_1957at 1960.862 kb on + strand, within EX28DRAFT_1957at 1960.863 kb on - strand, within EX28DRAFT_1957at 1960.863 kb on - strand, within EX28DRAFT_1957at 1960.863 kb on - strand, within EX28DRAFT_1957at 1960.864 kb on + strand, within EX28DRAFT_1957at 1960.865 kb on - strand, within EX28DRAFT_1957at 1960.879 kb on - strand, within EX28DRAFT_1957at 1960.880 kb on + strand, within EX28DRAFT_1957at 1960.911 kb on + strand, within EX28DRAFT_1957at 1960.928 kb on - strand, within EX28DRAFT_1957at 1960.928 kb on - strand, within EX28DRAFT_1957at 1960.945 kb on + strand, within EX28DRAFT_1957at 1960.999 kb on + strand, within EX28DRAFT_1957at 1961.005 kb on + strand, within EX28DRAFT_1957at 1961.133 kb on - strand, within EX28DRAFT_1957at 1961.136 kb on - strand, within EX28DRAFT_1957at 1961.364 kb on + strand, within EX28DRAFT_1957at 1961.370 kb on + strand, within EX28DRAFT_1957at 1961.370 kb on + strand, within EX28DRAFT_1957at 1961.370 kb on + strand, within EX28DRAFT_1957at 1961.371 kb on - strand, within EX28DRAFT_1957at 1961.371 kb on - strand, within EX28DRAFT_1957at 1961.397 kb on - strand, within EX28DRAFT_1957at 1961.432 kb on + strand, within EX28DRAFT_1957at 1961.544 kb on + strand, within EX28DRAFT_1957at 1961.546 kb on + strand, within EX28DRAFT_1957at 1961.600 kb on + strand, within EX28DRAFT_1957at 1961.620 kb on + strand, within EX28DRAFT_1957at 1961.658 kb on + strand, within EX28DRAFT_1957at 1961.705 kb on + strand, within EX28DRAFT_1957at 1961.705 kb on + strand, within EX28DRAFT_1957at 1961.705 kb on + strand, within EX28DRAFT_1957at 1961.818 kb on - strandat 1961.842 kb on + strandat 1961.896 kb on - strandat 1961.950 kb on - strandat 1962.033 kb on + strand, within EX28DRAFT_1958at 1962.038 kb on + strand, within EX28DRAFT_1958at 1962.074 kb on + strand, within EX28DRAFT_1958at 1962.076 kb on + strand, within EX28DRAFT_1958at 1962.077 kb on - strand, within EX28DRAFT_1958at 1962.102 kb on - strand, within EX28DRAFT_1958at 1962.173 kb on + strand, within EX28DRAFT_1958at 1962.173 kb on + strand, within EX28DRAFT_1958at 1962.174 kb on - strand, within EX28DRAFT_1958at 1962.174 kb on - strand, within EX28DRAFT_1958at 1962.174 kb on - strand, within EX28DRAFT_1958at 1962.174 kb on - strand, within EX28DRAFT_1958at 1962.177 kb on - strand, within EX28DRAFT_1958at 1962.248 kb on + strand, within EX28DRAFT_1958at 1962.249 kb on - strand, within EX28DRAFT_1958at 1962.249 kb on - strand, within EX28DRAFT_1958at 1962.249 kb on - strand, within EX28DRAFT_1958at 1962.283 kb on + strand, within EX28DRAFT_1958at 1962.313 kb on - strand, within EX28DRAFT_1958at 1962.683 kb on + strand, within EX28DRAFT_1958at 1962.683 kb on + strand, within EX28DRAFT_1958at 1962.684 kb on - strand, within EX28DRAFT_1958at 1962.824 kb on - strand, within EX28DRAFT_1958at 1962.824 kb on - strand, within EX28DRAFT_1958at 1962.824 kb on - strand, within EX28DRAFT_1958at 1962.956 kb on + strand, within EX28DRAFT_1958at 1963.062 kb on + strand, within EX28DRAFT_1958at 1963.175 kb on + strandat 1963.176 kb on - strandat 1963.176 kb on - strandat 1963.176 kb on - strandat 1963.177 kb on + strandat 1963.177 kb on + strandat 1963.178 kb on - strandat 1963.178 kb on - strandat 1963.275 kb on - strandat 1963.275 kb on - strandat 1963.332 kb on - strand, within EX28DRAFT_1959at 1963.492 kb on + strandat 1963.492 kb on + strandat 1963.492 kb on + strandat 1963.493 kb on - strandat 1963.494 kb on + strandat 1963.495 kb on - strandat 1963.647 kb on - strandat 1963.654 kb on - strandat 1963.693 kb on + strandat 1963.693 kb on + strandat 1963.694 kb on - strandat 1963.747 kb on - strandat 1963.801 kb on + strandat 1963.801 kb on + strandat 1964.092 kb on + strand, within EX28DRAFT_1960at 1964.269 kb on + strand, within EX28DRAFT_1960at 1964.270 kb on - strand, within EX28DRAFT_1960

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,960,861 - EX28DRAFT_1957 0.12 -0.3
1,960,862 + EX28DRAFT_1957 0.12 -1.6
1,960,862 + EX28DRAFT_1957 0.12 -0.3
1,960,863 - EX28DRAFT_1957 0.12 -0.5
1,960,863 - EX28DRAFT_1957 0.12 +1.5
1,960,863 - EX28DRAFT_1957 0.12 -1.4
1,960,864 + EX28DRAFT_1957 0.12 +0.1
1,960,865 - EX28DRAFT_1957 0.12 -0.3
1,960,879 - EX28DRAFT_1957 0.13 +0.1
1,960,880 + EX28DRAFT_1957 0.14 -0.2
1,960,911 + EX28DRAFT_1957 0.16 -0.2
1,960,928 - EX28DRAFT_1957 0.18 +0.0
1,960,928 - EX28DRAFT_1957 0.18 +0.0
1,960,945 + EX28DRAFT_1957 0.19 -0.1
1,960,999 + EX28DRAFT_1957 0.24 +0.0
1,961,005 + EX28DRAFT_1957 0.25 -0.3
1,961,133 - EX28DRAFT_1957 0.36 -0.4
1,961,136 - EX28DRAFT_1957 0.36 -0.4
1,961,364 + EX28DRAFT_1957 0.57 -0.2
1,961,370 + EX28DRAFT_1957 0.57 -0.3
1,961,370 + EX28DRAFT_1957 0.57 -2.1
1,961,370 + EX28DRAFT_1957 0.57 +0.3
1,961,371 - EX28DRAFT_1957 0.57 -1.8
1,961,371 - EX28DRAFT_1957 0.57 -0.0
1,961,397 - EX28DRAFT_1957 0.60 -0.1
1,961,432 + EX28DRAFT_1957 0.63 -0.7
1,961,544 + EX28DRAFT_1957 0.73 -2.3
1,961,546 + EX28DRAFT_1957 0.73 -0.5
1,961,600 + EX28DRAFT_1957 0.78 +0.0
1,961,620 + EX28DRAFT_1957 0.80 +0.8
1,961,658 + EX28DRAFT_1957 0.83 +0.2
1,961,705 + EX28DRAFT_1957 0.87 -0.2
1,961,705 + EX28DRAFT_1957 0.87 +0.7
1,961,705 + EX28DRAFT_1957 0.87 +0.3
1,961,818 - -0.0
1,961,842 + -0.5
1,961,896 - -0.2
1,961,950 - -0.2
1,962,033 + EX28DRAFT_1958 0.13 +0.9
1,962,038 + EX28DRAFT_1958 0.14 -0.0
1,962,074 + EX28DRAFT_1958 0.16 -0.2
1,962,076 + EX28DRAFT_1958 0.16 -1.6
1,962,077 - EX28DRAFT_1958 0.16 -3.8
1,962,102 - EX28DRAFT_1958 0.18 -0.2
1,962,173 + EX28DRAFT_1958 0.23 -0.6
1,962,173 + EX28DRAFT_1958 0.23 +0.5
1,962,174 - EX28DRAFT_1958 0.23 +0.2
1,962,174 - EX28DRAFT_1958 0.23 +0.7
1,962,174 - EX28DRAFT_1958 0.23 -0.0
1,962,174 - EX28DRAFT_1958 0.23 -0.1
1,962,177 - EX28DRAFT_1958 0.23 +0.0
1,962,248 + EX28DRAFT_1958 0.28 -0.6
1,962,249 - EX28DRAFT_1958 0.28 -1.6
1,962,249 - EX28DRAFT_1958 0.28 -0.1
1,962,249 - EX28DRAFT_1958 0.28 -0.6
1,962,283 + EX28DRAFT_1958 0.31 +1.1
1,962,313 - EX28DRAFT_1958 0.33 +0.8
1,962,683 + EX28DRAFT_1958 0.59 -0.2
1,962,683 + EX28DRAFT_1958 0.59 -0.0
1,962,684 - EX28DRAFT_1958 0.59 -1.7
1,962,824 - EX28DRAFT_1958 0.68 +1.0
1,962,824 - EX28DRAFT_1958 0.68 -0.2
1,962,824 - EX28DRAFT_1958 0.68 -0.6
1,962,956 + EX28DRAFT_1958 0.78 -0.7
1,963,062 + EX28DRAFT_1958 0.85 -0.4
1,963,175 + -0.5
1,963,176 - +0.4
1,963,176 - -0.7
1,963,176 - +0.0
1,963,177 + +0.0
1,963,177 + -0.2
1,963,178 - +0.2
1,963,178 - -0.0
1,963,275 - -2.3
1,963,275 - -1.2
1,963,332 - EX28DRAFT_1959 0.17 +0.1
1,963,492 + -0.3
1,963,492 + -2.4
1,963,492 + -0.0
1,963,493 - +0.9
1,963,494 + +0.0
1,963,495 - +0.5
1,963,647 - +0.3
1,963,654 - -1.0
1,963,693 + +2.5
1,963,693 + +0.5
1,963,694 - -0.6
1,963,747 - -0.1
1,963,801 + -0.4
1,963,801 + -3.6
1,964,092 + EX28DRAFT_1960 0.39 +0.2
1,964,269 + EX28DRAFT_1960 0.60 -1.1
1,964,270 - EX28DRAFT_1960 0.60 -0.4

Or see this region's nucleotide sequence