Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1947 and EX28DRAFT_1948 are separated by 102 nucleotides EX28DRAFT_1948 and EX28DRAFT_1949 overlap by 21 nucleotides EX28DRAFT_1949 and EX28DRAFT_1950 overlap by 4 nucleotides
EX28DRAFT_1947: EX28DRAFT_1947 - Cytosine/uracil/thiamine/allantoin permeases, at 1,951,947 to 1,953,443
_1947
EX28DRAFT_1948: EX28DRAFT_1948 - guanine deaminase (EC 3.5.4.3), at 1,953,546 to 1,954,862
_1948
EX28DRAFT_1949: EX28DRAFT_1949 - hydroxyisourate hydrolase, at 1,954,842 to 1,955,165
_1949
EX28DRAFT_1950: EX28DRAFT_1950 - OHCU decarboxylase, at 1,955,162 to 1,955,662
_1950
Position (kb)
1953
1954
1955 Strain fitness (log2 ratio)
-2
-1
0
1 at 1952.577 kb on + strand, within EX28DRAFT_1947 at 1952.578 kb on - strand, within EX28DRAFT_1947 at 1952.682 kb on + strand, within EX28DRAFT_1947 at 1952.683 kb on - strand, within EX28DRAFT_1947 at 1952.982 kb on - strand, within EX28DRAFT_1947 at 1953.154 kb on - strand, within EX28DRAFT_1947 at 1953.161 kb on + strand, within EX28DRAFT_1947 at 1953.161 kb on + strand, within EX28DRAFT_1947 at 1953.216 kb on + strand, within EX28DRAFT_1947 at 1953.216 kb on + strand, within EX28DRAFT_1947 at 1953.216 kb on + strand, within EX28DRAFT_1947 at 1953.216 kb on + strand, within EX28DRAFT_1947 at 1953.216 kb on + strand, within EX28DRAFT_1947 at 1953.216 kb on + strand, within EX28DRAFT_1947 at 1953.290 kb on + strand, within EX28DRAFT_1947 at 1953.291 kb on - strand, within EX28DRAFT_1947 at 1953.363 kb on + strand at 1953.585 kb on - strand at 1953.657 kb on - strand at 1953.658 kb on + strand at 1953.659 kb on - strand at 1953.708 kb on + strand, within EX28DRAFT_1948 at 1953.846 kb on + strand, within EX28DRAFT_1948 at 1953.846 kb on + strand, within EX28DRAFT_1948 at 1953.847 kb on - strand, within EX28DRAFT_1948 at 1954.563 kb on + strand, within EX28DRAFT_1948 at 1954.563 kb on + strand, within EX28DRAFT_1948 at 1954.564 kb on - strand, within EX28DRAFT_1948 at 1954.761 kb on + strand at 1954.761 kb on + strand at 1954.762 kb on - strand at 1955.094 kb on + strand, within EX28DRAFT_1949 at 1955.094 kb on + strand, within EX28DRAFT_1949 at 1955.095 kb on - strand, within EX28DRAFT_1949 at 1955.095 kb on - strand, within EX28DRAFT_1949 at 1955.095 kb on - strand, within EX28DRAFT_1949 at 1955.095 kb on - strand, within EX28DRAFT_1949 at 1955.145 kb on - strand at 1955.198 kb on - strand at 1955.274 kb on - strand, within EX28DRAFT_1950 at 1955.279 kb on - strand, within EX28DRAFT_1950 at 1955.662 kb on + strand at 1955.662 kb on + strand at 1955.662 kb on + strand at 1955.662 kb on + strand at 1955.662 kb on + strand at 1955.663 kb on - strand at 1955.663 kb on - strand at 1955.675 kb on - strand at 1955.746 kb on - strand at 1955.803 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,952,577 + EX28DRAFT_1947 0.42 -0.2 1,952,578 - EX28DRAFT_1947 0.42 +0.1 1,952,682 + EX28DRAFT_1947 0.49 -1.3 1,952,683 - EX28DRAFT_1947 0.49 -0.3 1,952,982 - EX28DRAFT_1947 0.69 +0.2 1,953,154 - EX28DRAFT_1947 0.81 -0.3 1,953,161 + EX28DRAFT_1947 0.81 -0.2 1,953,161 + EX28DRAFT_1947 0.81 -0.9 1,953,216 + EX28DRAFT_1947 0.85 -0.5 1,953,216 + EX28DRAFT_1947 0.85 +0.2 1,953,216 + EX28DRAFT_1947 0.85 +1.7 1,953,216 + EX28DRAFT_1947 0.85 -0.1 1,953,216 + EX28DRAFT_1947 0.85 -0.5 1,953,216 + EX28DRAFT_1947 0.85 -0.7 1,953,290 + EX28DRAFT_1947 0.90 +0.1 1,953,291 - EX28DRAFT_1947 0.90 +0.0 1,953,363 + +0.6 1,953,585 - -1.2 1,953,657 - -0.4 1,953,658 + -0.8 1,953,659 - -0.8 1,953,708 + EX28DRAFT_1948 0.12 +0.2 1,953,846 + EX28DRAFT_1948 0.23 +0.4 1,953,846 + EX28DRAFT_1948 0.23 +0.1 1,953,847 - EX28DRAFT_1948 0.23 +0.6 1,954,563 + EX28DRAFT_1948 0.77 +0.9 1,954,563 + EX28DRAFT_1948 0.77 +0.3 1,954,564 - EX28DRAFT_1948 0.77 -1.8 1,954,761 + +0.2 1,954,761 + +0.8 1,954,762 - -0.2 1,955,094 + EX28DRAFT_1949 0.78 +0.6 1,955,094 + EX28DRAFT_1949 0.78 -0.3 1,955,095 - EX28DRAFT_1949 0.78 +0.7 1,955,095 - EX28DRAFT_1949 0.78 +0.2 1,955,095 - EX28DRAFT_1949 0.78 +0.1 1,955,095 - EX28DRAFT_1949 0.78 +0.6 1,955,145 - +0.2 1,955,198 - -0.2 1,955,274 - EX28DRAFT_1950 0.22 -1.1 1,955,279 - EX28DRAFT_1950 0.23 +0.3 1,955,662 + -0.5 1,955,662 + -0.1 1,955,662 + +0.0 1,955,662 + +0.4 1,955,662 + -2.0 1,955,663 - +1.7 1,955,663 - +0.8 1,955,675 - -0.1 1,955,746 - +1.4 1,955,803 + -0.9
Or see this region's nucleotide sequence