Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1944 and EX28DRAFT_1945 are separated by 15 nucleotides EX28DRAFT_1945 and EX28DRAFT_1946 overlap by 1 nucleotides EX28DRAFT_1946 and EX28DRAFT_1947 are separated by 144 nucleotides
EX28DRAFT_1944: EX28DRAFT_1944 - putative urate catabolism protein, at 1,949,395 to 1,950,327
_1944
EX28DRAFT_1945: EX28DRAFT_1945 - Hydantoin racemase, at 1,950,343 to 1,951,086
_1945
EX28DRAFT_1946: EX28DRAFT_1946 - Transcriptional regulators, at 1,951,086 to 1,951,802
_1946
EX28DRAFT_1947: EX28DRAFT_1947 - Cytosine/uracil/thiamine/allantoin permeases, at 1,951,947 to 1,953,443
_1947
Position (kb)
1950
1951
1952 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1949.396 kb on + strand at 1949.396 kb on + strand at 1949.397 kb on - strand at 1949.397 kb on - strand at 1949.478 kb on + strand at 1949.479 kb on - strand at 1949.479 kb on - strand at 1949.479 kb on - strand at 1949.480 kb on + strand at 1949.609 kb on + strand, within EX28DRAFT_1944 at 1949.610 kb on - strand, within EX28DRAFT_1944 at 1949.613 kb on + strand, within EX28DRAFT_1944 at 1949.613 kb on + strand, within EX28DRAFT_1944 at 1949.613 kb on + strand, within EX28DRAFT_1944 at 1949.614 kb on - strand, within EX28DRAFT_1944 at 1949.615 kb on + strand, within EX28DRAFT_1944 at 1949.615 kb on + strand, within EX28DRAFT_1944 at 1949.615 kb on + strand, within EX28DRAFT_1944 at 1949.615 kb on + strand, within EX28DRAFT_1944 at 1949.616 kb on - strand, within EX28DRAFT_1944 at 1949.616 kb on - strand, within EX28DRAFT_1944 at 1949.616 kb on - strand, within EX28DRAFT_1944 at 1949.759 kb on + strand, within EX28DRAFT_1944 at 1949.832 kb on - strand, within EX28DRAFT_1944 at 1949.925 kb on - strand, within EX28DRAFT_1944 at 1950.215 kb on + strand, within EX28DRAFT_1944 at 1950.215 kb on + strand, within EX28DRAFT_1944 at 1950.377 kb on - strand at 1950.582 kb on + strand, within EX28DRAFT_1945 at 1950.582 kb on + strand, within EX28DRAFT_1945 at 1950.583 kb on - strand, within EX28DRAFT_1945 at 1950.686 kb on + strand, within EX28DRAFT_1945 at 1951.069 kb on + strand at 1951.070 kb on - strand at 1951.070 kb on - strand at 1951.071 kb on + strand at 1951.072 kb on - strand at 1951.170 kb on - strand, within EX28DRAFT_1946 at 1951.414 kb on + strand, within EX28DRAFT_1946 at 1951.791 kb on + strand at 1951.792 kb on - strand at 1951.792 kb on - strand at 1951.792 kb on - strand at 1951.907 kb on - strand at 1952.062 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,949,396 + +0.9 1,949,396 + +0.3 1,949,397 - +3.0 1,949,397 - -0.4 1,949,478 + -0.1 1,949,479 - +0.2 1,949,479 - +0.4 1,949,479 - +1.0 1,949,480 + +0.4 1,949,609 + EX28DRAFT_1944 0.23 -0.2 1,949,610 - EX28DRAFT_1944 0.23 +0.2 1,949,613 + EX28DRAFT_1944 0.23 -0.4 1,949,613 + EX28DRAFT_1944 0.23 +0.1 1,949,613 + EX28DRAFT_1944 0.23 -0.7 1,949,614 - EX28DRAFT_1944 0.23 +0.3 1,949,615 + EX28DRAFT_1944 0.24 -0.2 1,949,615 + EX28DRAFT_1944 0.24 -0.0 1,949,615 + EX28DRAFT_1944 0.24 +0.1 1,949,615 + EX28DRAFT_1944 0.24 -0.2 1,949,616 - EX28DRAFT_1944 0.24 +0.0 1,949,616 - EX28DRAFT_1944 0.24 +0.0 1,949,616 - EX28DRAFT_1944 0.24 -0.8 1,949,759 + EX28DRAFT_1944 0.39 +0.6 1,949,832 - EX28DRAFT_1944 0.47 +0.1 1,949,925 - EX28DRAFT_1944 0.57 +0.1 1,950,215 + EX28DRAFT_1944 0.88 -1.6 1,950,215 + EX28DRAFT_1944 0.88 +0.6 1,950,377 - -0.5 1,950,582 + EX28DRAFT_1945 0.32 -2.2 1,950,582 + EX28DRAFT_1945 0.32 -0.1 1,950,583 - EX28DRAFT_1945 0.32 +0.5 1,950,686 + EX28DRAFT_1945 0.46 -1.0 1,951,069 + +0.6 1,951,070 - +0.2 1,951,070 - +0.8 1,951,071 + +0.0 1,951,072 - -0.2 1,951,170 - EX28DRAFT_1946 0.12 -0.2 1,951,414 + EX28DRAFT_1946 0.46 -1.1 1,951,791 + -0.2 1,951,792 - +0.4 1,951,792 - +1.1 1,951,792 - -0.3 1,951,907 - +0.3 1,952,062 - +0.5
Or see this region's nucleotide sequence