Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1945

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1944 and EX28DRAFT_1945 are separated by 15 nucleotidesEX28DRAFT_1945 and EX28DRAFT_1946 overlap by 1 nucleotidesEX28DRAFT_1946 and EX28DRAFT_1947 are separated by 144 nucleotides EX28DRAFT_1944: EX28DRAFT_1944 - putative urate catabolism protein, at 1,949,395 to 1,950,327 _1944 EX28DRAFT_1945: EX28DRAFT_1945 - Hydantoin racemase, at 1,950,343 to 1,951,086 _1945 EX28DRAFT_1946: EX28DRAFT_1946 - Transcriptional regulators, at 1,951,086 to 1,951,802 _1946 EX28DRAFT_1947: EX28DRAFT_1947 - Cytosine/uracil/thiamine/allantoin permeases, at 1,951,947 to 1,953,443 _1947 Position (kb) 1950 1951 1952Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1949.396 kb on + strandat 1949.396 kb on + strandat 1949.397 kb on - strandat 1949.397 kb on - strandat 1949.478 kb on + strandat 1949.479 kb on - strandat 1949.479 kb on - strandat 1949.479 kb on - strandat 1949.480 kb on + strandat 1949.609 kb on + strand, within EX28DRAFT_1944at 1949.610 kb on - strand, within EX28DRAFT_1944at 1949.613 kb on + strand, within EX28DRAFT_1944at 1949.613 kb on + strand, within EX28DRAFT_1944at 1949.613 kb on + strand, within EX28DRAFT_1944at 1949.614 kb on - strand, within EX28DRAFT_1944at 1949.615 kb on + strand, within EX28DRAFT_1944at 1949.615 kb on + strand, within EX28DRAFT_1944at 1949.615 kb on + strand, within EX28DRAFT_1944at 1949.615 kb on + strand, within EX28DRAFT_1944at 1949.616 kb on - strand, within EX28DRAFT_1944at 1949.616 kb on - strand, within EX28DRAFT_1944at 1949.616 kb on - strand, within EX28DRAFT_1944at 1949.759 kb on + strand, within EX28DRAFT_1944at 1949.832 kb on - strand, within EX28DRAFT_1944at 1949.925 kb on - strand, within EX28DRAFT_1944at 1950.215 kb on + strand, within EX28DRAFT_1944at 1950.215 kb on + strand, within EX28DRAFT_1944at 1950.377 kb on - strandat 1950.582 kb on + strand, within EX28DRAFT_1945at 1950.582 kb on + strand, within EX28DRAFT_1945at 1950.583 kb on - strand, within EX28DRAFT_1945at 1950.686 kb on + strand, within EX28DRAFT_1945at 1951.069 kb on + strandat 1951.070 kb on - strandat 1951.070 kb on - strandat 1951.071 kb on + strandat 1951.072 kb on - strandat 1951.170 kb on - strand, within EX28DRAFT_1946at 1951.414 kb on + strand, within EX28DRAFT_1946at 1951.791 kb on + strandat 1951.792 kb on - strandat 1951.792 kb on - strandat 1951.792 kb on - strandat 1951.907 kb on - strandat 1952.062 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
1,949,396 + +0.9
1,949,396 + +0.3
1,949,397 - +3.0
1,949,397 - -0.4
1,949,478 + -0.1
1,949,479 - +0.2
1,949,479 - +0.4
1,949,479 - +1.0
1,949,480 + +0.4
1,949,609 + EX28DRAFT_1944 0.23 -0.2
1,949,610 - EX28DRAFT_1944 0.23 +0.2
1,949,613 + EX28DRAFT_1944 0.23 -0.4
1,949,613 + EX28DRAFT_1944 0.23 +0.1
1,949,613 + EX28DRAFT_1944 0.23 -0.7
1,949,614 - EX28DRAFT_1944 0.23 +0.3
1,949,615 + EX28DRAFT_1944 0.24 -0.2
1,949,615 + EX28DRAFT_1944 0.24 -0.0
1,949,615 + EX28DRAFT_1944 0.24 +0.1
1,949,615 + EX28DRAFT_1944 0.24 -0.2
1,949,616 - EX28DRAFT_1944 0.24 +0.0
1,949,616 - EX28DRAFT_1944 0.24 +0.0
1,949,616 - EX28DRAFT_1944 0.24 -0.8
1,949,759 + EX28DRAFT_1944 0.39 +0.6
1,949,832 - EX28DRAFT_1944 0.47 +0.1
1,949,925 - EX28DRAFT_1944 0.57 +0.1
1,950,215 + EX28DRAFT_1944 0.88 -1.6
1,950,215 + EX28DRAFT_1944 0.88 +0.6
1,950,377 - -0.5
1,950,582 + EX28DRAFT_1945 0.32 -2.2
1,950,582 + EX28DRAFT_1945 0.32 -0.1
1,950,583 - EX28DRAFT_1945 0.32 +0.5
1,950,686 + EX28DRAFT_1945 0.46 -1.0
1,951,069 + +0.6
1,951,070 - +0.2
1,951,070 - +0.8
1,951,071 + +0.0
1,951,072 - -0.2
1,951,170 - EX28DRAFT_1946 0.12 -0.2
1,951,414 + EX28DRAFT_1946 0.46 -1.1
1,951,791 + -0.2
1,951,792 - +0.4
1,951,792 - +1.1
1,951,792 - -0.3
1,951,907 - +0.3
1,952,062 - +0.5

Or see this region's nucleotide sequence