Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1933 and EX28DRAFT_1934 overlap by 4 nucleotides EX28DRAFT_1934 and EX28DRAFT_1935 are separated by 13 nucleotides EX28DRAFT_1935 and EX28DRAFT_1936 overlap by 20 nucleotides
EX28DRAFT_1933: EX28DRAFT_1933 - amidase, hydantoinase/carbamoylase family, at 1,939,276 to 1,940,514
_1933
EX28DRAFT_1934: EX28DRAFT_1934 - Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase, at 1,940,511 to 1,941,752
_1934
EX28DRAFT_1935: EX28DRAFT_1935 - ABC-type polar amino acid transport system, ATPase component, at 1,941,766 to 1,942,503
_1935
EX28DRAFT_1936: EX28DRAFT_1936 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,942,484 to 1,943,161
_1936
Position (kb)
1940
1941
1942 Strain fitness (log2 ratio)
-1
0
1 at 1939.773 kb on + strand, within EX28DRAFT_1933 at 1939.774 kb on - strand, within EX28DRAFT_1933 at 1939.777 kb on - strand, within EX28DRAFT_1933 at 1939.777 kb on - strand, within EX28DRAFT_1933 at 1940.429 kb on + strand at 1940.588 kb on - strand at 1940.984 kb on - strand, within EX28DRAFT_1934 at 1940.984 kb on - strand, within EX28DRAFT_1934 at 1940.984 kb on - strand, within EX28DRAFT_1934 at 1941.019 kb on + strand, within EX28DRAFT_1934 at 1941.019 kb on + strand, within EX28DRAFT_1934 at 1941.020 kb on - strand, within EX28DRAFT_1934 at 1941.020 kb on - strand, within EX28DRAFT_1934 at 1941.020 kb on - strand, within EX28DRAFT_1934 at 1941.350 kb on + strand, within EX28DRAFT_1934 at 1941.407 kb on + strand, within EX28DRAFT_1934 at 1941.408 kb on - strand, within EX28DRAFT_1934 at 1941.485 kb on + strand, within EX28DRAFT_1934 at 1941.485 kb on + strand, within EX28DRAFT_1934 at 1941.614 kb on - strand, within EX28DRAFT_1934 at 1941.614 kb on - strand, within EX28DRAFT_1934 at 1941.614 kb on - strand, within EX28DRAFT_1934 at 1941.757 kb on + strand at 1941.874 kb on - strand, within EX28DRAFT_1935 at 1941.928 kb on + strand, within EX28DRAFT_1935 at 1941.928 kb on + strand, within EX28DRAFT_1935 at 1942.104 kb on - strand, within EX28DRAFT_1935 at 1942.104 kb on - strand, within EX28DRAFT_1935 at 1942.469 kb on + strand at 1942.469 kb on + strand at 1942.470 kb on - strand at 1942.486 kb on - strand at 1942.555 kb on + strand, within EX28DRAFT_1936 at 1942.556 kb on - strand, within EX28DRAFT_1936 at 1942.556 kb on - strand, within EX28DRAFT_1936 at 1942.600 kb on - strand, within EX28DRAFT_1936 at 1942.676 kb on - strand, within EX28DRAFT_1936 at 1942.676 kb on - strand, within EX28DRAFT_1936
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,939,773 + EX28DRAFT_1933 0.40 +0.4 1,939,774 - EX28DRAFT_1933 0.40 -0.5 1,939,777 - EX28DRAFT_1933 0.40 +1.1 1,939,777 - EX28DRAFT_1933 0.40 +0.2 1,940,429 + -0.4 1,940,588 - +0.1 1,940,984 - EX28DRAFT_1934 0.38 -0.3 1,940,984 - EX28DRAFT_1934 0.38 +0.8 1,940,984 - EX28DRAFT_1934 0.38 -0.1 1,941,019 + EX28DRAFT_1934 0.41 +0.2 1,941,019 + EX28DRAFT_1934 0.41 -0.9 1,941,020 - EX28DRAFT_1934 0.41 -0.4 1,941,020 - EX28DRAFT_1934 0.41 +0.8 1,941,020 - EX28DRAFT_1934 0.41 +0.1 1,941,350 + EX28DRAFT_1934 0.68 +0.5 1,941,407 + EX28DRAFT_1934 0.72 -0.2 1,941,408 - EX28DRAFT_1934 0.72 +1.2 1,941,485 + EX28DRAFT_1934 0.78 -0.0 1,941,485 + EX28DRAFT_1934 0.78 +0.5 1,941,614 - EX28DRAFT_1934 0.89 +1.0 1,941,614 - EX28DRAFT_1934 0.89 +1.0 1,941,614 - EX28DRAFT_1934 0.89 +0.0 1,941,757 + +0.3 1,941,874 - EX28DRAFT_1935 0.15 -0.4 1,941,928 + EX28DRAFT_1935 0.22 +0.1 1,941,928 + EX28DRAFT_1935 0.22 -0.8 1,942,104 - EX28DRAFT_1935 0.46 +0.2 1,942,104 - EX28DRAFT_1935 0.46 -0.2 1,942,469 + +0.5 1,942,469 + +0.2 1,942,470 - -1.0 1,942,486 - -0.1 1,942,555 + EX28DRAFT_1936 0.10 -0.1 1,942,556 - EX28DRAFT_1936 0.11 +0.1 1,942,556 - EX28DRAFT_1936 0.11 -1.2 1,942,600 - EX28DRAFT_1936 0.17 -0.0 1,942,676 - EX28DRAFT_1936 0.28 +0.5 1,942,676 - EX28DRAFT_1936 0.28 -0.4
Or see this region's nucleotide sequence