Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1929

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1927 and EX28DRAFT_1928 are separated by 1 nucleotidesEX28DRAFT_1928 and EX28DRAFT_1929 are separated by 100 nucleotidesEX28DRAFT_1929 and EX28DRAFT_1930 are separated by 1 nucleotidesEX28DRAFT_1930 and EX28DRAFT_1931 are separated by 159 nucleotidesEX28DRAFT_1931 and EX28DRAFT_1932 are separated by 60 nucleotides EX28DRAFT_1927: EX28DRAFT_1927 - Short-chain dehydrogenases of various substrate specificities, at 1,935,330 to 1,936,124 _1927 EX28DRAFT_1928: EX28DRAFT_1928 - transcriptional regulator, HxlR family, at 1,936,126 to 1,936,485 _1928 EX28DRAFT_1929: EX28DRAFT_1929 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,936,586 to 1,937,335 _1929 EX28DRAFT_1930: EX28DRAFT_1930 - Uncharacterized membrane-associated protein, at 1,937,337 to 1,937,840 _1930 EX28DRAFT_1931: EX28DRAFT_1931 - RNA, at 1,938,000 to 1,938,169 _1931 EX28DRAFT_1932: EX28DRAFT_1932 - Mg/Co/Ni transporter MgtE (contains CBS domain), at 1,938,230 to 1,939,231 _1932 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -2 -1 0 1 2at 1935.654 kb on - strand, within EX28DRAFT_1927at 1935.654 kb on - strand, within EX28DRAFT_1927at 1935.657 kb on - strand, within EX28DRAFT_1927at 1935.694 kb on - strand, within EX28DRAFT_1927at 1935.789 kb on + strand, within EX28DRAFT_1927at 1935.801 kb on - strand, within EX28DRAFT_1927at 1935.965 kb on + strand, within EX28DRAFT_1927at 1936.122 kb on + strandat 1936.437 kb on + strand, within EX28DRAFT_1928at 1936.437 kb on + strand, within EX28DRAFT_1928at 1936.437 kb on + strand, within EX28DRAFT_1928at 1936.438 kb on - strand, within EX28DRAFT_1928at 1936.439 kb on + strand, within EX28DRAFT_1928at 1936.440 kb on - strand, within EX28DRAFT_1928at 1936.549 kb on + strandat 1936.549 kb on + strandat 1936.549 kb on + strandat 1936.550 kb on - strandat 1936.550 kb on - strandat 1936.550 kb on - strandat 1936.551 kb on + strandat 1936.552 kb on - strandat 1936.603 kb on + strandat 1936.603 kb on + strandat 1936.603 kb on + strandat 1936.604 kb on - strandat 1936.607 kb on + strandat 1936.609 kb on + strandat 1936.609 kb on + strandat 1936.609 kb on + strandat 1936.610 kb on - strandat 1936.729 kb on + strand, within EX28DRAFT_1929at 1936.730 kb on - strand, within EX28DRAFT_1929at 1936.730 kb on - strand, within EX28DRAFT_1929at 1936.730 kb on - strand, within EX28DRAFT_1929at 1936.938 kb on + strand, within EX28DRAFT_1929at 1937.034 kb on - strand, within EX28DRAFT_1929at 1937.034 kb on - strand, within EX28DRAFT_1929at 1937.285 kb on + strandat 1937.286 kb on - strandat 1937.371 kb on + strandat 1937.371 kb on + strandat 1937.372 kb on - strandat 1937.414 kb on - strand, within EX28DRAFT_1930at 1937.465 kb on - strand, within EX28DRAFT_1930at 1937.493 kb on - strand, within EX28DRAFT_1930at 1937.611 kb on + strand, within EX28DRAFT_1930at 1937.611 kb on + strand, within EX28DRAFT_1930at 1937.643 kb on + strand, within EX28DRAFT_1930at 1937.743 kb on - strand, within EX28DRAFT_1930at 1937.860 kb on + strandat 1937.940 kb on - strandat 1937.976 kb on - strandat 1937.981 kb on + strandat 1937.982 kb on - strandat 1938.052 kb on + strand, within EX28DRAFT_1931at 1938.111 kb on + strand, within EX28DRAFT_1931at 1938.112 kb on - strand, within EX28DRAFT_1931at 1938.113 kb on + strand, within EX28DRAFT_1931at 1938.137 kb on + strand, within EX28DRAFT_1931at 1938.230 kb on - strandat 1938.288 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
1,935,654 - EX28DRAFT_1927 0.41 -0.1
1,935,654 - EX28DRAFT_1927 0.41 -0.1
1,935,657 - EX28DRAFT_1927 0.41 +0.1
1,935,694 - EX28DRAFT_1927 0.46 +0.1
1,935,789 + EX28DRAFT_1927 0.58 +2.3
1,935,801 - EX28DRAFT_1927 0.59 +0.2
1,935,965 + EX28DRAFT_1927 0.80 +0.1
1,936,122 + +0.4
1,936,437 + EX28DRAFT_1928 0.86 -0.8
1,936,437 + EX28DRAFT_1928 0.86 -0.1
1,936,437 + EX28DRAFT_1928 0.86 -2.4
1,936,438 - EX28DRAFT_1928 0.87 -0.6
1,936,439 + EX28DRAFT_1928 0.87 +0.7
1,936,440 - EX28DRAFT_1928 0.87 +0.3
1,936,549 + +0.4
1,936,549 + +0.4
1,936,549 + +0.1
1,936,550 - -1.4
1,936,550 - -1.5
1,936,550 - +0.0
1,936,551 + +0.9
1,936,552 - -0.9
1,936,603 + +0.2
1,936,603 + -1.3
1,936,603 + +0.1
1,936,604 - -0.8
1,936,607 + +0.1
1,936,609 + -0.0
1,936,609 + +0.1
1,936,609 + +0.7
1,936,610 - -0.0
1,936,729 + EX28DRAFT_1929 0.19 +0.4
1,936,730 - EX28DRAFT_1929 0.19 +0.7
1,936,730 - EX28DRAFT_1929 0.19 -0.4
1,936,730 - EX28DRAFT_1929 0.19 +0.0
1,936,938 + EX28DRAFT_1929 0.47 -0.2
1,937,034 - EX28DRAFT_1929 0.60 -0.6
1,937,034 - EX28DRAFT_1929 0.60 +0.4
1,937,285 + -0.7
1,937,286 - -0.2
1,937,371 + +0.0
1,937,371 + +0.1
1,937,372 - +0.5
1,937,414 - EX28DRAFT_1930 0.15 -0.1
1,937,465 - EX28DRAFT_1930 0.25 +1.0
1,937,493 - EX28DRAFT_1930 0.31 +0.4
1,937,611 + EX28DRAFT_1930 0.54 -0.3
1,937,611 + EX28DRAFT_1930 0.54 +1.2
1,937,643 + EX28DRAFT_1930 0.61 -0.8
1,937,743 - EX28DRAFT_1930 0.81 +0.5
1,937,860 + -0.0
1,937,940 - -0.3
1,937,976 - +0.2
1,937,981 + +0.9
1,937,982 - +0.6
1,938,052 + EX28DRAFT_1931 0.31 -1.7
1,938,111 + EX28DRAFT_1931 0.65 -0.8
1,938,112 - EX28DRAFT_1931 0.66 -0.4
1,938,113 + EX28DRAFT_1931 0.66 +0.3
1,938,137 + EX28DRAFT_1931 0.81 -1.7
1,938,230 - +0.4
1,938,288 - +0.2

Or see this region's nucleotide sequence