Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1927

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1925 and EX28DRAFT_1926 are separated by 152 nucleotidesEX28DRAFT_1926 and EX28DRAFT_1927 are separated by 125 nucleotidesEX28DRAFT_1927 and EX28DRAFT_1928 are separated by 1 nucleotidesEX28DRAFT_1928 and EX28DRAFT_1929 are separated by 100 nucleotides EX28DRAFT_1925: EX28DRAFT_1925 - Histidine phosphatase superfamily (branch 2), at 1,933,367 to 1,934,608 _1925 EX28DRAFT_1926: EX28DRAFT_1926 - transcriptional regulator, HxlR family, at 1,934,761 to 1,935,204 _1926 EX28DRAFT_1927: EX28DRAFT_1927 - Short-chain dehydrogenases of various substrate specificities, at 1,935,330 to 1,936,124 _1927 EX28DRAFT_1928: EX28DRAFT_1928 - transcriptional regulator, HxlR family, at 1,936,126 to 1,936,485 _1928 EX28DRAFT_1929: EX28DRAFT_1929 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,936,586 to 1,937,335 _1929 Position (kb) 1935 1936 1937Strain fitness (log2 ratio) -2 -1 0 1 2at 1934.355 kb on + strand, within EX28DRAFT_1925at 1934.355 kb on + strand, within EX28DRAFT_1925at 1934.356 kb on - strand, within EX28DRAFT_1925at 1934.356 kb on - strand, within EX28DRAFT_1925at 1934.367 kb on + strand, within EX28DRAFT_1925at 1934.367 kb on + strand, within EX28DRAFT_1925at 1934.367 kb on + strand, within EX28DRAFT_1925at 1934.367 kb on + strand, within EX28DRAFT_1925at 1934.368 kb on - strand, within EX28DRAFT_1925at 1934.507 kb on + strandat 1934.507 kb on + strandat 1934.508 kb on - strandat 1934.523 kb on + strandat 1934.612 kb on + strandat 1934.613 kb on - strandat 1934.714 kb on + strandat 1934.770 kb on - strandat 1934.998 kb on + strand, within EX28DRAFT_1926at 1934.998 kb on + strand, within EX28DRAFT_1926at 1934.999 kb on - strand, within EX28DRAFT_1926at 1934.999 kb on - strand, within EX28DRAFT_1926at 1934.999 kb on - strand, within EX28DRAFT_1926at 1935.322 kb on - strandat 1935.581 kb on + strand, within EX28DRAFT_1927at 1935.654 kb on - strand, within EX28DRAFT_1927at 1935.654 kb on - strand, within EX28DRAFT_1927at 1935.657 kb on - strand, within EX28DRAFT_1927at 1935.694 kb on - strand, within EX28DRAFT_1927at 1935.789 kb on + strand, within EX28DRAFT_1927at 1935.801 kb on - strand, within EX28DRAFT_1927at 1935.965 kb on + strand, within EX28DRAFT_1927at 1936.122 kb on + strandat 1936.437 kb on + strand, within EX28DRAFT_1928at 1936.437 kb on + strand, within EX28DRAFT_1928at 1936.437 kb on + strand, within EX28DRAFT_1928at 1936.438 kb on - strand, within EX28DRAFT_1928at 1936.439 kb on + strand, within EX28DRAFT_1928at 1936.440 kb on - strand, within EX28DRAFT_1928at 1936.549 kb on + strandat 1936.549 kb on + strandat 1936.549 kb on + strandat 1936.550 kb on - strandat 1936.550 kb on - strandat 1936.550 kb on - strandat 1936.551 kb on + strandat 1936.552 kb on - strandat 1936.603 kb on + strandat 1936.603 kb on + strandat 1936.603 kb on + strandat 1936.604 kb on - strandat 1936.607 kb on + strandat 1936.609 kb on + strandat 1936.609 kb on + strandat 1936.609 kb on + strandat 1936.610 kb on - strandat 1936.729 kb on + strand, within EX28DRAFT_1929at 1936.730 kb on - strand, within EX28DRAFT_1929at 1936.730 kb on - strand, within EX28DRAFT_1929at 1936.730 kb on - strand, within EX28DRAFT_1929at 1936.938 kb on + strand, within EX28DRAFT_1929at 1937.034 kb on - strand, within EX28DRAFT_1929at 1937.034 kb on - strand, within EX28DRAFT_1929

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,934,355 + EX28DRAFT_1925 0.80 -0.7
1,934,355 + EX28DRAFT_1925 0.80 +0.1
1,934,356 - EX28DRAFT_1925 0.80 -0.1
1,934,356 - EX28DRAFT_1925 0.80 -0.9
1,934,367 + EX28DRAFT_1925 0.81 +0.2
1,934,367 + EX28DRAFT_1925 0.81 +0.0
1,934,367 + EX28DRAFT_1925 0.81 -0.1
1,934,367 + EX28DRAFT_1925 0.81 -0.1
1,934,368 - EX28DRAFT_1925 0.81 +1.0
1,934,507 + +1.1
1,934,507 + +0.3
1,934,508 - -0.2
1,934,523 + -0.1
1,934,612 + +0.1
1,934,613 - -0.1
1,934,714 + +0.9
1,934,770 - -0.0
1,934,998 + EX28DRAFT_1926 0.53 -0.0
1,934,998 + EX28DRAFT_1926 0.53 -0.1
1,934,999 - EX28DRAFT_1926 0.54 +0.2
1,934,999 - EX28DRAFT_1926 0.54 +1.0
1,934,999 - EX28DRAFT_1926 0.54 +0.1
1,935,322 - -0.1
1,935,581 + EX28DRAFT_1927 0.32 +0.1
1,935,654 - EX28DRAFT_1927 0.41 -0.1
1,935,654 - EX28DRAFT_1927 0.41 -0.1
1,935,657 - EX28DRAFT_1927 0.41 +0.1
1,935,694 - EX28DRAFT_1927 0.46 +0.1
1,935,789 + EX28DRAFT_1927 0.58 +2.3
1,935,801 - EX28DRAFT_1927 0.59 +0.2
1,935,965 + EX28DRAFT_1927 0.80 +0.1
1,936,122 + +0.4
1,936,437 + EX28DRAFT_1928 0.86 -0.8
1,936,437 + EX28DRAFT_1928 0.86 -0.1
1,936,437 + EX28DRAFT_1928 0.86 -2.4
1,936,438 - EX28DRAFT_1928 0.87 -0.6
1,936,439 + EX28DRAFT_1928 0.87 +0.7
1,936,440 - EX28DRAFT_1928 0.87 +0.3
1,936,549 + +0.4
1,936,549 + +0.4
1,936,549 + +0.1
1,936,550 - -1.4
1,936,550 - -1.5
1,936,550 - +0.0
1,936,551 + +0.9
1,936,552 - -0.9
1,936,603 + +0.2
1,936,603 + -1.3
1,936,603 + +0.1
1,936,604 - -0.8
1,936,607 + +0.1
1,936,609 + -0.0
1,936,609 + +0.1
1,936,609 + +0.7
1,936,610 - -0.0
1,936,729 + EX28DRAFT_1929 0.19 +0.4
1,936,730 - EX28DRAFT_1929 0.19 +0.7
1,936,730 - EX28DRAFT_1929 0.19 -0.4
1,936,730 - EX28DRAFT_1929 0.19 +0.0
1,936,938 + EX28DRAFT_1929 0.47 -0.2
1,937,034 - EX28DRAFT_1929 0.60 -0.6
1,937,034 - EX28DRAFT_1929 0.60 +0.4

Or see this region's nucleotide sequence