Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1907 and EX28DRAFT_1908 are separated by 251 nucleotides EX28DRAFT_1908 and EX28DRAFT_1909 are separated by 81 nucleotides EX28DRAFT_1909 and EX28DRAFT_1910 are separated by 116 nucleotides
EX28DRAFT_1907: EX28DRAFT_1907 - FTR1 family protein, at 1,915,357 to 1,916,190
_1907
EX28DRAFT_1908: EX28DRAFT_1908 - Nucleoside permease, at 1,916,442 to 1,917,626
_1908
EX28DRAFT_1909: EX28DRAFT_1909 - Protein of unknown function (DUF3574), at 1,917,708 to 1,918,127
_1909
EX28DRAFT_1910: EX28DRAFT_1910 - sodium/proline symporter, at 1,918,244 to 1,919,752
_1910
Position (kb)
1916
1917
1918 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1915.630 kb on - strand, within EX28DRAFT_1907 at 1915.686 kb on - strand, within EX28DRAFT_1907 at 1915.918 kb on - strand, within EX28DRAFT_1907 at 1915.918 kb on - strand, within EX28DRAFT_1907 at 1916.066 kb on - strand, within EX28DRAFT_1907 at 1916.165 kb on - strand at 1916.170 kb on - strand at 1916.202 kb on - strand at 1916.250 kb on + strand at 1916.334 kb on - strand at 1916.334 kb on - strand at 1916.358 kb on + strand at 1916.359 kb on - strand at 1916.360 kb on + strand at 1916.361 kb on - strand at 1916.361 kb on - strand at 1916.366 kb on - strand at 1916.366 kb on - strand at 1916.437 kb on + strand at 1916.439 kb on - strand at 1916.441 kb on + strand at 1916.543 kb on - strand at 1916.902 kb on - strand, within EX28DRAFT_1908 at 1916.995 kb on - strand, within EX28DRAFT_1908 at 1916.995 kb on - strand, within EX28DRAFT_1908 at 1916.996 kb on + strand, within EX28DRAFT_1908 at 1916.996 kb on + strand, within EX28DRAFT_1908 at 1916.997 kb on - strand, within EX28DRAFT_1908 at 1917.062 kb on + strand, within EX28DRAFT_1908 at 1917.062 kb on + strand, within EX28DRAFT_1908 at 1917.163 kb on - strand, within EX28DRAFT_1908 at 1917.165 kb on - strand, within EX28DRAFT_1908 at 1917.259 kb on + strand, within EX28DRAFT_1908 at 1917.260 kb on - strand, within EX28DRAFT_1908 at 1917.292 kb on - strand, within EX28DRAFT_1908 at 1917.292 kb on - strand, within EX28DRAFT_1908 at 1917.295 kb on + strand, within EX28DRAFT_1908 at 1917.296 kb on - strand, within EX28DRAFT_1908 at 1917.296 kb on - strand, within EX28DRAFT_1908 at 1917.296 kb on - strand, within EX28DRAFT_1908 at 1917.296 kb on - strand, within EX28DRAFT_1908 at 1917.356 kb on + strand, within EX28DRAFT_1908 at 1917.356 kb on + strand, within EX28DRAFT_1908 at 1917.357 kb on - strand, within EX28DRAFT_1908 at 1917.357 kb on - strand, within EX28DRAFT_1908 at 1917.676 kb on + strand at 1917.676 kb on + strand at 1917.677 kb on - strand at 1917.677 kb on - strand at 1917.900 kb on + strand, within EX28DRAFT_1909 at 1917.994 kb on - strand, within EX28DRAFT_1909 at 1918.092 kb on + strand at 1918.147 kb on + strand at 1918.147 kb on + strand at 1918.148 kb on - strand at 1918.148 kb on - strand at 1918.149 kb on + strand at 1918.150 kb on - strand at 1918.150 kb on - strand at 1918.241 kb on + strand at 1918.245 kb on + strand at 1918.246 kb on - strand at 1918.282 kb on - strand at 1918.622 kb on - strand, within EX28DRAFT_1910 at 1918.622 kb on - strand, within EX28DRAFT_1910
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,915,630 - EX28DRAFT_1907 0.33 -0.4 1,915,686 - EX28DRAFT_1907 0.39 +0.2 1,915,918 - EX28DRAFT_1907 0.67 +0.1 1,915,918 - EX28DRAFT_1907 0.67 +0.8 1,916,066 - EX28DRAFT_1907 0.85 -0.9 1,916,165 - +0.2 1,916,170 - -0.1 1,916,202 - +0.6 1,916,250 + -0.5 1,916,334 - -0.4 1,916,334 - +1.5 1,916,358 + +1.1 1,916,359 - +0.4 1,916,360 + -0.9 1,916,361 - -1.4 1,916,361 - +0.8 1,916,366 - -0.3 1,916,366 - +0.8 1,916,437 + +0.6 1,916,439 - +0.2 1,916,441 + -0.2 1,916,543 - -0.2 1,916,902 - EX28DRAFT_1908 0.39 -0.0 1,916,995 - EX28DRAFT_1908 0.47 +0.1 1,916,995 - EX28DRAFT_1908 0.47 +0.2 1,916,996 + EX28DRAFT_1908 0.47 +1.5 1,916,996 + EX28DRAFT_1908 0.47 +0.3 1,916,997 - EX28DRAFT_1908 0.47 -0.2 1,917,062 + EX28DRAFT_1908 0.52 +0.8 1,917,062 + EX28DRAFT_1908 0.52 +0.3 1,917,163 - EX28DRAFT_1908 0.61 +0.1 1,917,165 - EX28DRAFT_1908 0.61 -0.1 1,917,259 + EX28DRAFT_1908 0.69 +0.1 1,917,260 - EX28DRAFT_1908 0.69 +0.4 1,917,292 - EX28DRAFT_1908 0.72 -0.1 1,917,292 - EX28DRAFT_1908 0.72 -0.5 1,917,295 + EX28DRAFT_1908 0.72 -2.3 1,917,296 - EX28DRAFT_1908 0.72 +0.2 1,917,296 - EX28DRAFT_1908 0.72 +0.5 1,917,296 - EX28DRAFT_1908 0.72 -0.1 1,917,296 - EX28DRAFT_1908 0.72 -0.6 1,917,356 + EX28DRAFT_1908 0.77 +0.3 1,917,356 + EX28DRAFT_1908 0.77 +1.9 1,917,357 - EX28DRAFT_1908 0.77 +0.3 1,917,357 - EX28DRAFT_1908 0.77 +0.0 1,917,676 + -1.7 1,917,676 + +0.3 1,917,677 - +0.8 1,917,677 - +0.6 1,917,900 + EX28DRAFT_1909 0.46 +0.0 1,917,994 - EX28DRAFT_1909 0.68 +0.3 1,918,092 + -0.5 1,918,147 + -0.3 1,918,147 + +0.7 1,918,148 - +0.6 1,918,148 - -0.3 1,918,149 + +0.0 1,918,150 - -1.3 1,918,150 - +1.4 1,918,241 + -0.0 1,918,245 + +0.2 1,918,246 - +0.1 1,918,282 - -0.1 1,918,622 - EX28DRAFT_1910 0.25 +0.0 1,918,622 - EX28DRAFT_1910 0.25 -0.2
Or see this region's nucleotide sequence