Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1904

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1903 and EX28DRAFT_1904 are separated by 394 nucleotidesEX28DRAFT_1904 and EX28DRAFT_1905 are separated by 224 nucleotides EX28DRAFT_1903: EX28DRAFT_1903 - amino acid carrier protein, at 1,909,708 to 1,911,213 _1903 EX28DRAFT_1904: EX28DRAFT_1904 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 1,911,608 to 1,912,675 _1904 EX28DRAFT_1905: EX28DRAFT_1905 - Tat-translocated enzyme, at 1,912,900 to 1,914,183 _1905 Position (kb) 1911 1912 1913Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1910.750 kb on - strand, within EX28DRAFT_1903at 1911.088 kb on - strandat 1911.216 kb on - strandat 1911.302 kb on + strandat 1911.368 kb on + strandat 1911.400 kb on + strandat 1911.475 kb on + strandat 1911.502 kb on + strandat 1911.536 kb on + strandat 1911.536 kb on + strandat 1911.536 kb on + strandat 1911.538 kb on + strandat 1911.540 kb on + strandat 1911.540 kb on + strandat 1911.541 kb on - strandat 1911.880 kb on + strand, within EX28DRAFT_1904at 1911.892 kb on + strand, within EX28DRAFT_1904at 1911.895 kb on - strand, within EX28DRAFT_1904at 1911.942 kb on + strand, within EX28DRAFT_1904at 1911.949 kb on + strand, within EX28DRAFT_1904at 1911.949 kb on + strand, within EX28DRAFT_1904at 1911.984 kb on + strand, within EX28DRAFT_1904at 1911.985 kb on - strand, within EX28DRAFT_1904at 1911.999 kb on + strand, within EX28DRAFT_1904at 1912.000 kb on - strand, within EX28DRAFT_1904at 1912.200 kb on + strand, within EX28DRAFT_1904at 1912.275 kb on - strand, within EX28DRAFT_1904at 1912.330 kb on + strand, within EX28DRAFT_1904at 1912.330 kb on + strand, within EX28DRAFT_1904at 1912.331 kb on - strand, within EX28DRAFT_1904at 1912.423 kb on - strand, within EX28DRAFT_1904at 1912.454 kb on - strand, within EX28DRAFT_1904at 1912.488 kb on - strand, within EX28DRAFT_1904at 1912.488 kb on - strand, within EX28DRAFT_1904at 1912.528 kb on + strand, within EX28DRAFT_1904at 1912.643 kb on - strandat 1912.648 kb on + strandat 1912.715 kb on + strandat 1912.726 kb on + strandat 1912.731 kb on + strandat 1912.731 kb on + strandat 1912.731 kb on + strandat 1912.732 kb on - strandat 1912.735 kb on + strandat 1912.735 kb on + strandat 1912.736 kb on - strandat 1912.766 kb on - strandat 1912.827 kb on + strandat 1912.831 kb on - strandat 1912.840 kb on + strandat 1912.858 kb on - strandat 1912.928 kb on + strandat 1912.928 kb on + strandat 1912.986 kb on + strandat 1912.986 kb on + strandat 1912.987 kb on - strandat 1913.117 kb on + strand, within EX28DRAFT_1905at 1913.158 kb on + strand, within EX28DRAFT_1905

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,910,750 - EX28DRAFT_1903 0.69 +0.8
1,911,088 - -0.3
1,911,216 - +0.8
1,911,302 + -0.1
1,911,368 + -2.9
1,911,400 + +0.8
1,911,475 + -0.5
1,911,502 + +0.3
1,911,536 + -0.7
1,911,536 + -0.1
1,911,536 + -0.1
1,911,538 + -0.0
1,911,540 + +0.4
1,911,540 + -0.2
1,911,541 - +0.2
1,911,880 + EX28DRAFT_1904 0.25 -0.0
1,911,892 + EX28DRAFT_1904 0.27 -0.5
1,911,895 - EX28DRAFT_1904 0.27 +0.6
1,911,942 + EX28DRAFT_1904 0.31 +0.2
1,911,949 + EX28DRAFT_1904 0.32 +0.3
1,911,949 + EX28DRAFT_1904 0.32 +0.3
1,911,984 + EX28DRAFT_1904 0.35 +0.9
1,911,985 - EX28DRAFT_1904 0.35 +0.6
1,911,999 + EX28DRAFT_1904 0.37 +0.1
1,912,000 - EX28DRAFT_1904 0.37 +0.4
1,912,200 + EX28DRAFT_1904 0.55 +0.8
1,912,275 - EX28DRAFT_1904 0.62 +0.5
1,912,330 + EX28DRAFT_1904 0.68 +2.9
1,912,330 + EX28DRAFT_1904 0.68 +0.3
1,912,331 - EX28DRAFT_1904 0.68 +0.8
1,912,423 - EX28DRAFT_1904 0.76 -0.4
1,912,454 - EX28DRAFT_1904 0.79 +0.3
1,912,488 - EX28DRAFT_1904 0.82 +0.3
1,912,488 - EX28DRAFT_1904 0.82 +0.5
1,912,528 + EX28DRAFT_1904 0.86 -0.5
1,912,643 - +0.4
1,912,648 + +0.5
1,912,715 + +0.8
1,912,726 + -0.0
1,912,731 + +2.1
1,912,731 + -0.6
1,912,731 + -3.4
1,912,732 - -0.5
1,912,735 + -2.3
1,912,735 + +0.6
1,912,736 - -0.8
1,912,766 - +0.6
1,912,827 + +0.0
1,912,831 - +0.4
1,912,840 + +0.2
1,912,858 - -0.1
1,912,928 + -0.7
1,912,928 + +1.5
1,912,986 + +0.2
1,912,986 + -0.0
1,912,987 - -0.2
1,913,117 + EX28DRAFT_1905 0.17 +0.5
1,913,158 + EX28DRAFT_1905 0.20 +3.5

Or see this region's nucleotide sequence