Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1903 and EX28DRAFT_1904 are separated by 394 nucleotides EX28DRAFT_1904 and EX28DRAFT_1905 are separated by 224 nucleotides
EX28DRAFT_1903: EX28DRAFT_1903 - amino acid carrier protein, at 1,909,708 to 1,911,213
_1903
EX28DRAFT_1904: EX28DRAFT_1904 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 1,911,608 to 1,912,675
_1904
EX28DRAFT_1905: EX28DRAFT_1905 - Tat-translocated enzyme, at 1,912,900 to 1,914,183
_1905
Position (kb)
1911
1912
1913 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1910.750 kb on - strand, within EX28DRAFT_1903 at 1911.088 kb on - strand at 1911.216 kb on - strand at 1911.302 kb on + strand at 1911.368 kb on + strand at 1911.400 kb on + strand at 1911.475 kb on + strand at 1911.502 kb on + strand at 1911.536 kb on + strand at 1911.536 kb on + strand at 1911.536 kb on + strand at 1911.538 kb on + strand at 1911.540 kb on + strand at 1911.540 kb on + strand at 1911.541 kb on - strand at 1911.880 kb on + strand, within EX28DRAFT_1904 at 1911.892 kb on + strand, within EX28DRAFT_1904 at 1911.895 kb on - strand, within EX28DRAFT_1904 at 1911.942 kb on + strand, within EX28DRAFT_1904 at 1911.949 kb on + strand, within EX28DRAFT_1904 at 1911.949 kb on + strand, within EX28DRAFT_1904 at 1911.984 kb on + strand, within EX28DRAFT_1904 at 1911.985 kb on - strand, within EX28DRAFT_1904 at 1911.999 kb on + strand, within EX28DRAFT_1904 at 1912.000 kb on - strand, within EX28DRAFT_1904 at 1912.200 kb on + strand, within EX28DRAFT_1904 at 1912.275 kb on - strand, within EX28DRAFT_1904 at 1912.330 kb on + strand, within EX28DRAFT_1904 at 1912.330 kb on + strand, within EX28DRAFT_1904 at 1912.331 kb on - strand, within EX28DRAFT_1904 at 1912.423 kb on - strand, within EX28DRAFT_1904 at 1912.454 kb on - strand, within EX28DRAFT_1904 at 1912.488 kb on - strand, within EX28DRAFT_1904 at 1912.488 kb on - strand, within EX28DRAFT_1904 at 1912.528 kb on + strand, within EX28DRAFT_1904 at 1912.643 kb on - strand at 1912.648 kb on + strand at 1912.715 kb on + strand at 1912.726 kb on + strand at 1912.731 kb on + strand at 1912.731 kb on + strand at 1912.731 kb on + strand at 1912.732 kb on - strand at 1912.735 kb on + strand at 1912.735 kb on + strand at 1912.736 kb on - strand at 1912.766 kb on - strand at 1912.827 kb on + strand at 1912.831 kb on - strand at 1912.840 kb on + strand at 1912.858 kb on - strand at 1912.928 kb on + strand at 1912.928 kb on + strand at 1912.986 kb on + strand at 1912.986 kb on + strand at 1912.987 kb on - strand at 1913.117 kb on + strand, within EX28DRAFT_1905 at 1913.158 kb on + strand, within EX28DRAFT_1905
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,910,750 - EX28DRAFT_1903 0.69 +0.8 1,911,088 - -0.3 1,911,216 - +0.8 1,911,302 + -0.1 1,911,368 + -2.9 1,911,400 + +0.8 1,911,475 + -0.5 1,911,502 + +0.3 1,911,536 + -0.7 1,911,536 + -0.1 1,911,536 + -0.1 1,911,538 + -0.0 1,911,540 + +0.4 1,911,540 + -0.2 1,911,541 - +0.2 1,911,880 + EX28DRAFT_1904 0.25 -0.0 1,911,892 + EX28DRAFT_1904 0.27 -0.5 1,911,895 - EX28DRAFT_1904 0.27 +0.6 1,911,942 + EX28DRAFT_1904 0.31 +0.2 1,911,949 + EX28DRAFT_1904 0.32 +0.3 1,911,949 + EX28DRAFT_1904 0.32 +0.3 1,911,984 + EX28DRAFT_1904 0.35 +0.9 1,911,985 - EX28DRAFT_1904 0.35 +0.6 1,911,999 + EX28DRAFT_1904 0.37 +0.1 1,912,000 - EX28DRAFT_1904 0.37 +0.4 1,912,200 + EX28DRAFT_1904 0.55 +0.8 1,912,275 - EX28DRAFT_1904 0.62 +0.5 1,912,330 + EX28DRAFT_1904 0.68 +2.9 1,912,330 + EX28DRAFT_1904 0.68 +0.3 1,912,331 - EX28DRAFT_1904 0.68 +0.8 1,912,423 - EX28DRAFT_1904 0.76 -0.4 1,912,454 - EX28DRAFT_1904 0.79 +0.3 1,912,488 - EX28DRAFT_1904 0.82 +0.3 1,912,488 - EX28DRAFT_1904 0.82 +0.5 1,912,528 + EX28DRAFT_1904 0.86 -0.5 1,912,643 - +0.4 1,912,648 + +0.5 1,912,715 + +0.8 1,912,726 + -0.0 1,912,731 + +2.1 1,912,731 + -0.6 1,912,731 + -3.4 1,912,732 - -0.5 1,912,735 + -2.3 1,912,735 + +0.6 1,912,736 - -0.8 1,912,766 - +0.6 1,912,827 + +0.0 1,912,831 - +0.4 1,912,840 + +0.2 1,912,858 - -0.1 1,912,928 + -0.7 1,912,928 + +1.5 1,912,986 + +0.2 1,912,986 + -0.0 1,912,987 - -0.2 1,913,117 + EX28DRAFT_1905 0.17 +0.5 1,913,158 + EX28DRAFT_1905 0.20 +3.5
Or see this region's nucleotide sequence