Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1896

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1894 and EX28DRAFT_1895 are separated by 21 nucleotidesEX28DRAFT_1895 and EX28DRAFT_1896 are separated by 84 nucleotidesEX28DRAFT_1896 and EX28DRAFT_1897 are separated by 232 nucleotidesEX28DRAFT_1897 and EX28DRAFT_1898 are separated by 45 nucleotidesEX28DRAFT_1898 and EX28DRAFT_1899 are separated by 48 nucleotides EX28DRAFT_1894: EX28DRAFT_1894 - Uncharacterized component of anaerobic dehydrogenases, at 1,903,771 to 1,904,322 _1894 EX28DRAFT_1895: EX28DRAFT_1895 - Histidinol phosphatase and related hydrolases of the PHP family, at 1,904,344 to 1,905,081 _1895 EX28DRAFT_1896: EX28DRAFT_1896 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 1,905,166 to 1,906,104 _1896 EX28DRAFT_1897: EX28DRAFT_1897 - tRNA, at 1,906,337 to 1,906,424 _1897 EX28DRAFT_1898: EX28DRAFT_1898 - RNA, at 1,906,470 to 1,906,607 _1898 EX28DRAFT_1899: EX28DRAFT_1899 - Transcriptional regulator, at 1,906,656 to 1,907,561 _1899 Position (kb) 1905 1906 1907Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1904.234 kb on - strand, within EX28DRAFT_1894at 1904.279 kb on + strandat 1904.279 kb on + strandat 1904.280 kb on - strandat 1904.345 kb on + strandat 1904.416 kb on + strandat 1904.446 kb on - strand, within EX28DRAFT_1895at 1904.446 kb on - strand, within EX28DRAFT_1895at 1904.608 kb on - strand, within EX28DRAFT_1895at 1904.608 kb on - strand, within EX28DRAFT_1895at 1904.985 kb on + strand, within EX28DRAFT_1895at 1904.985 kb on + strand, within EX28DRAFT_1895at 1904.994 kb on + strand, within EX28DRAFT_1895at 1905.014 kb on + strandat 1905.015 kb on - strandat 1905.015 kb on - strandat 1905.032 kb on + strandat 1905.032 kb on + strandat 1905.061 kb on - strandat 1905.061 kb on - strandat 1905.077 kb on + strandat 1905.136 kb on - strandat 1905.238 kb on + strandat 1905.239 kb on - strandat 1905.240 kb on + strandat 1905.240 kb on + strandat 1905.241 kb on - strandat 1905.241 kb on - strandat 1905.241 kb on - strandat 1905.241 kb on - strandat 1905.241 kb on - strandat 1905.241 kb on - strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.243 kb on - strandat 1905.346 kb on - strand, within EX28DRAFT_1896at 1905.347 kb on + strand, within EX28DRAFT_1896at 1905.348 kb on - strand, within EX28DRAFT_1896at 1905.348 kb on - strand, within EX28DRAFT_1896at 1905.443 kb on + strand, within EX28DRAFT_1896at 1905.523 kb on - strand, within EX28DRAFT_1896at 1905.693 kb on + strand, within EX28DRAFT_1896at 1905.784 kb on + strand, within EX28DRAFT_1896at 1905.800 kb on + strand, within EX28DRAFT_1896at 1905.800 kb on + strand, within EX28DRAFT_1896at 1905.983 kb on + strand, within EX28DRAFT_1896at 1905.984 kb on - strand, within EX28DRAFT_1896at 1906.064 kb on + strandat 1906.088 kb on + strandat 1906.096 kb on + strandat 1906.097 kb on - strandat 1906.101 kb on - strandat 1906.172 kb on + strandat 1906.218 kb on + strandat 1906.218 kb on + strandat 1906.254 kb on + strandat 1906.297 kb on + strandat 1906.429 kb on + strandat 1906.429 kb on + strandat 1906.429 kb on + strandat 1906.429 kb on + strandat 1906.604 kb on + strandat 1906.604 kb on + strandat 1906.604 kb on + strandat 1906.604 kb on + strandat 1906.604 kb on + strandat 1906.604 kb on + strandat 1906.606 kb on + strandat 1906.606 kb on + strandat 1906.607 kb on - strandat 1906.678 kb on + strandat 1906.958 kb on + strand, within EX28DRAFT_1899at 1906.959 kb on - strand, within EX28DRAFT_1899at 1906.964 kb on + strand, within EX28DRAFT_1899at 1906.964 kb on + strand, within EX28DRAFT_1899at 1906.965 kb on - strand, within EX28DRAFT_1899at 1907.092 kb on - strand, within EX28DRAFT_1899at 1907.095 kb on - strand, within EX28DRAFT_1899

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,904,234 - EX28DRAFT_1894 0.84 +0.2
1,904,279 + +0.3
1,904,279 + +0.2
1,904,280 - -0.1
1,904,345 + -0.3
1,904,416 + -0.4
1,904,446 - EX28DRAFT_1895 0.14 +0.4
1,904,446 - EX28DRAFT_1895 0.14 -0.5
1,904,608 - EX28DRAFT_1895 0.36 +0.7
1,904,608 - EX28DRAFT_1895 0.36 +0.7
1,904,985 + EX28DRAFT_1895 0.87 -2.6
1,904,985 + EX28DRAFT_1895 0.87 +0.2
1,904,994 + EX28DRAFT_1895 0.88 -1.8
1,905,014 + -0.6
1,905,015 - +0.7
1,905,015 - -0.3
1,905,032 + +0.1
1,905,032 + -0.2
1,905,061 - -0.1
1,905,061 - -0.8
1,905,077 + +0.4
1,905,136 - -0.1
1,905,238 + -0.4
1,905,239 - -0.5
1,905,240 + -0.1
1,905,240 + -2.4
1,905,241 - +0.4
1,905,241 - +0.2
1,905,241 - +0.4
1,905,241 - -0.5
1,905,241 - -0.1
1,905,241 - +0.3
1,905,242 + +0.7
1,905,242 + +0.5
1,905,242 + +0.1
1,905,242 + +1.0
1,905,242 + -1.3
1,905,242 + +0.2
1,905,243 - -0.7
1,905,346 - EX28DRAFT_1896 0.19 +0.2
1,905,347 + EX28DRAFT_1896 0.19 -0.7
1,905,348 - EX28DRAFT_1896 0.19 +0.1
1,905,348 - EX28DRAFT_1896 0.19 +0.2
1,905,443 + EX28DRAFT_1896 0.29 +1.4
1,905,523 - EX28DRAFT_1896 0.38 +0.2
1,905,693 + EX28DRAFT_1896 0.56 +0.2
1,905,784 + EX28DRAFT_1896 0.66 -0.6
1,905,800 + EX28DRAFT_1896 0.68 +0.8
1,905,800 + EX28DRAFT_1896 0.68 +0.5
1,905,983 + EX28DRAFT_1896 0.87 +0.2
1,905,984 - EX28DRAFT_1896 0.87 +1.0
1,906,064 + +0.6
1,906,088 + -4.2
1,906,096 + +1.1
1,906,097 - +0.1
1,906,101 - -0.0
1,906,172 + -0.9
1,906,218 + +0.8
1,906,218 + -0.1
1,906,254 + +0.3
1,906,297 + -0.7
1,906,429 + +0.6
1,906,429 + -0.6
1,906,429 + +0.6
1,906,429 + -0.5
1,906,604 + +1.6
1,906,604 + -0.2
1,906,604 + -0.5
1,906,604 + +1.7
1,906,604 + -0.5
1,906,604 + +1.4
1,906,606 + +0.2
1,906,606 + -0.7
1,906,607 - -5.7
1,906,678 + +0.4
1,906,958 + EX28DRAFT_1899 0.33 -0.5
1,906,959 - EX28DRAFT_1899 0.33 -0.2
1,906,964 + EX28DRAFT_1899 0.34 -0.9
1,906,964 + EX28DRAFT_1899 0.34 -0.5
1,906,965 - EX28DRAFT_1899 0.34 +0.6
1,907,092 - EX28DRAFT_1899 0.48 -1.1
1,907,095 - EX28DRAFT_1899 0.48 +0.1

Or see this region's nucleotide sequence