Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1876

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1874 and EX28DRAFT_1875 are separated by 1 nucleotidesEX28DRAFT_1875 and EX28DRAFT_1876 are separated by 41 nucleotidesEX28DRAFT_1876 and EX28DRAFT_1877 are separated by 221 nucleotides EX28DRAFT_1874: EX28DRAFT_1874 - Cytochrome B561, at 1,886,468 to 1,887,091 _1874 EX28DRAFT_1875: EX28DRAFT_1875 - Uncharacterized conserved protein, at 1,887,093 to 1,887,671 _1875 EX28DRAFT_1876: EX28DRAFT_1876 - Predicted sulfurtransferase, at 1,887,713 to 1,888,762 _1876 EX28DRAFT_1877: EX28DRAFT_1877 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 1,888,984 to 1,889,910 _1877 Position (kb) 1887 1888 1889Strain fitness (log2 ratio) -2 -1 0 1 2at 1886.817 kb on - strand, within EX28DRAFT_1874at 1886.854 kb on + strand, within EX28DRAFT_1874at 1887.035 kb on - strandat 1887.048 kb on + strandat 1887.131 kb on - strandat 1887.131 kb on - strandat 1887.133 kb on + strandat 1887.133 kb on + strandat 1887.166 kb on - strand, within EX28DRAFT_1875at 1887.243 kb on - strand, within EX28DRAFT_1875at 1887.320 kb on + strand, within EX28DRAFT_1875at 1887.321 kb on - strand, within EX28DRAFT_1875at 1887.407 kb on + strand, within EX28DRAFT_1875at 1887.452 kb on + strand, within EX28DRAFT_1875at 1887.506 kb on + strand, within EX28DRAFT_1875at 1887.591 kb on - strand, within EX28DRAFT_1875at 1887.656 kb on - strandat 1887.656 kb on - strandat 1887.673 kb on - strandat 1887.711 kb on + strandat 1887.989 kb on - strand, within EX28DRAFT_1876at 1888.108 kb on + strand, within EX28DRAFT_1876at 1888.108 kb on + strand, within EX28DRAFT_1876at 1888.109 kb on - strand, within EX28DRAFT_1876at 1888.167 kb on + strand, within EX28DRAFT_1876at 1888.168 kb on - strand, within EX28DRAFT_1876at 1888.168 kb on - strand, within EX28DRAFT_1876at 1888.168 kb on - strand, within EX28DRAFT_1876at 1888.171 kb on + strand, within EX28DRAFT_1876at 1888.172 kb on - strand, within EX28DRAFT_1876at 1888.172 kb on - strand, within EX28DRAFT_1876at 1888.183 kb on + strand, within EX28DRAFT_1876at 1888.190 kb on - strand, within EX28DRAFT_1876at 1888.282 kb on - strand, within EX28DRAFT_1876at 1888.282 kb on - strand, within EX28DRAFT_1876at 1888.301 kb on - strand, within EX28DRAFT_1876at 1888.359 kb on + strand, within EX28DRAFT_1876at 1888.359 kb on + strand, within EX28DRAFT_1876at 1888.475 kb on - strand, within EX28DRAFT_1876at 1888.555 kb on + strand, within EX28DRAFT_1876at 1888.587 kb on + strand, within EX28DRAFT_1876at 1888.668 kb on + strandat 1888.668 kb on + strandat 1888.668 kb on + strandat 1888.684 kb on + strandat 1888.685 kb on - strandat 1888.751 kb on + strandat 1888.767 kb on + strandat 1888.767 kb on + strandat 1888.768 kb on - strandat 1888.795 kb on - strandat 1888.816 kb on - strandat 1888.816 kb on - strandat 1888.834 kb on - strandat 1888.930 kb on - strandat 1889.092 kb on - strand, within EX28DRAFT_1877at 1889.216 kb on - strand, within EX28DRAFT_1877at 1889.578 kb on + strand, within EX28DRAFT_1877at 1889.616 kb on - strand, within EX28DRAFT_1877

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
1,886,817 - EX28DRAFT_1874 0.56 +0.2
1,886,854 + EX28DRAFT_1874 0.62 -0.1
1,887,035 - -0.6
1,887,048 + -0.5
1,887,131 - -1.2
1,887,131 - -2.0
1,887,133 + +0.1
1,887,133 + -0.8
1,887,166 - EX28DRAFT_1875 0.13 -0.6
1,887,243 - EX28DRAFT_1875 0.26 +0.5
1,887,320 + EX28DRAFT_1875 0.39 -0.1
1,887,321 - EX28DRAFT_1875 0.39 -0.1
1,887,407 + EX28DRAFT_1875 0.54 -0.3
1,887,452 + EX28DRAFT_1875 0.62 -0.6
1,887,506 + EX28DRAFT_1875 0.71 +0.9
1,887,591 - EX28DRAFT_1875 0.86 -0.1
1,887,656 - -0.1
1,887,656 - +0.6
1,887,673 - +0.3
1,887,711 + -1.2
1,887,989 - EX28DRAFT_1876 0.26 -0.4
1,888,108 + EX28DRAFT_1876 0.38 -1.2
1,888,108 + EX28DRAFT_1876 0.38 -1.5
1,888,109 - EX28DRAFT_1876 0.38 -0.5
1,888,167 + EX28DRAFT_1876 0.43 -0.1
1,888,168 - EX28DRAFT_1876 0.43 -0.1
1,888,168 - EX28DRAFT_1876 0.43 +0.7
1,888,168 - EX28DRAFT_1876 0.43 +0.0
1,888,171 + EX28DRAFT_1876 0.44 -0.3
1,888,172 - EX28DRAFT_1876 0.44 -0.5
1,888,172 - EX28DRAFT_1876 0.44 -1.5
1,888,183 + EX28DRAFT_1876 0.45 -0.0
1,888,190 - EX28DRAFT_1876 0.45 -0.7
1,888,282 - EX28DRAFT_1876 0.54 +0.5
1,888,282 - EX28DRAFT_1876 0.54 -0.3
1,888,301 - EX28DRAFT_1876 0.56 -2.2
1,888,359 + EX28DRAFT_1876 0.62 +0.7
1,888,359 + EX28DRAFT_1876 0.62 -0.6
1,888,475 - EX28DRAFT_1876 0.73 -0.1
1,888,555 + EX28DRAFT_1876 0.80 -0.5
1,888,587 + EX28DRAFT_1876 0.83 -1.2
1,888,668 + +0.0
1,888,668 + +1.8
1,888,668 + +0.2
1,888,684 + -0.7
1,888,685 - +0.4
1,888,751 + -1.1
1,888,767 + -0.2
1,888,767 + -1.4
1,888,768 - -1.6
1,888,795 - +0.2
1,888,816 - -0.7
1,888,816 - +0.1
1,888,834 - +0.2
1,888,930 - +0.7
1,889,092 - EX28DRAFT_1877 0.12 -0.9
1,889,216 - EX28DRAFT_1877 0.25 +0.6
1,889,578 + EX28DRAFT_1877 0.64 -0.0
1,889,616 - EX28DRAFT_1877 0.68 -1.0

Or see this region's nucleotide sequence