Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1841 and EX28DRAFT_1842 are separated by 36 nucleotides EX28DRAFT_1842 and EX28DRAFT_1843 are separated by 35 nucleotides EX28DRAFT_1843 and EX28DRAFT_1844 are separated by 66 nucleotides EX28DRAFT_1844 and EX28DRAFT_1845 are separated by 212 nucleotides EX28DRAFT_1845 and EX28DRAFT_1846 are separated by 24 nucleotides
EX28DRAFT_1841: EX28DRAFT_1841 - Predicted metal-binding, possibly nucleic acid-binding protein, at 1,856,986 to 1,857,507
_1841
EX28DRAFT_1842: EX28DRAFT_1842 - RNA, at 1,857,544 to 1,857,654
_1842
EX28DRAFT_1843: EX28DRAFT_1843 - MAF protein, at 1,857,690 to 1,858,232
_1843
EX28DRAFT_1844: EX28DRAFT_1844 - pseudouridine synthase, RluA family, at 1,858,299 to 1,859,246
_1844
EX28DRAFT_1845: EX28DRAFT_1845 - RNA, at 1,859,459 to 1,859,794
_1845
EX28DRAFT_1846: EX28DRAFT_1846 - ribonuclease, Rne/Rng family, at 1,859,819 to 1,862,947
_1846
Position (kb)
1858
1859
1860 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1857.430 kb on - strand, within EX28DRAFT_1841 at 1857.538 kb on - strand at 1857.579 kb on + strand, within EX28DRAFT_1842 at 1857.602 kb on - strand, within EX28DRAFT_1842 at 1857.629 kb on + strand, within EX28DRAFT_1842 at 1857.630 kb on - strand, within EX28DRAFT_1842 at 1857.632 kb on - strand, within EX28DRAFT_1842 at 1857.632 kb on - strand, within EX28DRAFT_1842 at 1857.845 kb on - strand, within EX28DRAFT_1843 at 1857.955 kb on - strand, within EX28DRAFT_1843 at 1857.972 kb on + strand, within EX28DRAFT_1843 at 1857.972 kb on + strand, within EX28DRAFT_1843 at 1857.973 kb on - strand, within EX28DRAFT_1843 at 1857.975 kb on - strand, within EX28DRAFT_1843 at 1858.021 kb on + strand, within EX28DRAFT_1843 at 1858.022 kb on - strand, within EX28DRAFT_1843 at 1858.060 kb on - strand, within EX28DRAFT_1843 at 1858.177 kb on + strand, within EX28DRAFT_1843 at 1858.275 kb on - strand at 1858.376 kb on + strand at 1858.632 kb on - strand, within EX28DRAFT_1844 at 1859.045 kb on + strand, within EX28DRAFT_1844 at 1859.263 kb on + strand at 1859.300 kb on + strand at 1859.300 kb on + strand at 1859.301 kb on - strand at 1859.301 kb on - strand at 1859.301 kb on - strand at 1859.301 kb on - strand at 1859.302 kb on + strand at 1859.303 kb on - strand at 1859.306 kb on + strand at 1859.353 kb on + strand at 1859.404 kb on + strand at 1859.484 kb on + strand at 1859.549 kb on + strand, within EX28DRAFT_1845 at 1859.697 kb on + strand, within EX28DRAFT_1845
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,857,430 - EX28DRAFT_1841 0.85 -0.3 1,857,538 - -0.3 1,857,579 + EX28DRAFT_1842 0.32 -1.1 1,857,602 - EX28DRAFT_1842 0.52 -0.2 1,857,629 + EX28DRAFT_1842 0.77 +0.2 1,857,630 - EX28DRAFT_1842 0.77 -0.0 1,857,632 - EX28DRAFT_1842 0.79 +0.1 1,857,632 - EX28DRAFT_1842 0.79 -0.0 1,857,845 - EX28DRAFT_1843 0.29 +0.8 1,857,955 - EX28DRAFT_1843 0.49 -0.5 1,857,972 + EX28DRAFT_1843 0.52 +0.2 1,857,972 + EX28DRAFT_1843 0.52 +0.1 1,857,973 - EX28DRAFT_1843 0.52 -0.1 1,857,975 - EX28DRAFT_1843 0.52 -0.5 1,858,021 + EX28DRAFT_1843 0.61 +0.0 1,858,022 - EX28DRAFT_1843 0.61 -0.4 1,858,060 - EX28DRAFT_1843 0.68 -0.0 1,858,177 + EX28DRAFT_1843 0.90 -0.9 1,858,275 - -0.2 1,858,376 + +0.0 1,858,632 - EX28DRAFT_1844 0.35 -0.2 1,859,045 + EX28DRAFT_1844 0.79 -2.2 1,859,263 + +0.0 1,859,300 + -0.4 1,859,300 + +0.1 1,859,301 - -0.8 1,859,301 - +0.4 1,859,301 - +0.1 1,859,301 - -0.6 1,859,302 + +2.5 1,859,303 - -0.9 1,859,306 + +0.2 1,859,353 + -0.9 1,859,404 + +0.8 1,859,484 + -1.6 1,859,549 + EX28DRAFT_1845 0.27 -3.4 1,859,697 + EX28DRAFT_1845 0.71 +0.5
Or see this region's nucleotide sequence