Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1824 and EX28DRAFT_1825 overlap by 20 nucleotides EX28DRAFT_1825 and EX28DRAFT_1826 are separated by 10 nucleotides EX28DRAFT_1826 and EX28DRAFT_1827 are separated by 1 nucleotides EX28DRAFT_1827 and EX28DRAFT_1828 are separated by 247 nucleotides
EX28DRAFT_1824: EX28DRAFT_1824 - Predicted choline kinase involved in LPS biosynthesis, at 1,842,737 to 1,843,561
_1824
EX28DRAFT_1825: EX28DRAFT_1825 - uncharacterized proteobacterial lipoprotein, at 1,843,542 to 1,844,189
_1825
EX28DRAFT_1826: EX28DRAFT_1826 - Predicted periplasmic lipoprotein, at 1,844,200 to 1,844,574
_1826
EX28DRAFT_1827: EX28DRAFT_1827 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 1,844,576 to 1,844,935
_1827
EX28DRAFT_1828: EX28DRAFT_1828 - PTS system, glucose-specific IIBC component, at 1,845,183 to 1,846,616
_1828
Position (kb) 1844
1845 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1843.230 kb on + strand, within EX28DRAFT_1824 at 1843.273 kb on + strand, within EX28DRAFT_1824 at 1843.291 kb on - strand, within EX28DRAFT_1824 at 1843.445 kb on + strand, within EX28DRAFT_1824 at 1843.445 kb on + strand, within EX28DRAFT_1824 at 1843.445 kb on + strand, within EX28DRAFT_1824 at 1843.445 kb on + strand, within EX28DRAFT_1824 at 1843.446 kb on - strand, within EX28DRAFT_1824 at 1843.447 kb on + strand, within EX28DRAFT_1824 at 1843.448 kb on - strand, within EX28DRAFT_1824 at 1843.512 kb on + strand at 1843.513 kb on - strand at 1843.566 kb on - strand at 1843.660 kb on + strand, within EX28DRAFT_1825 at 1843.660 kb on + strand, within EX28DRAFT_1825 at 1843.676 kb on + strand, within EX28DRAFT_1825 at 1843.778 kb on + strand, within EX28DRAFT_1825 at 1844.207 kb on + strand at 1844.226 kb on + strand at 1844.227 kb on - strand at 1844.241 kb on - strand, within EX28DRAFT_1826 at 1844.241 kb on - strand, within EX28DRAFT_1826 at 1844.329 kb on + strand, within EX28DRAFT_1826 at 1844.330 kb on - strand, within EX28DRAFT_1826 at 1844.545 kb on + strand at 1844.587 kb on + strand at 1844.587 kb on + strand at 1844.588 kb on - strand at 1844.588 kb on - strand at 1844.588 kb on - strand at 1844.638 kb on + strand, within EX28DRAFT_1827 at 1844.743 kb on + strand, within EX28DRAFT_1827 at 1844.743 kb on + strand, within EX28DRAFT_1827 at 1844.743 kb on + strand, within EX28DRAFT_1827 at 1844.784 kb on - strand, within EX28DRAFT_1827 at 1844.784 kb on - strand, within EX28DRAFT_1827 at 1844.874 kb on + strand, within EX28DRAFT_1827 at 1844.980 kb on - strand at 1845.020 kb on + strand at 1845.137 kb on + strand at 1845.164 kb on - strand at 1845.164 kb on - strand at 1845.184 kb on + strand at 1845.184 kb on + strand at 1845.184 kb on + strand at 1845.199 kb on + strand at 1845.252 kb on + strand at 1845.274 kb on - strand at 1845.312 kb on + strand at 1845.369 kb on - strand, within EX28DRAFT_1828 at 1845.489 kb on - strand, within EX28DRAFT_1828 at 1845.511 kb on + strand, within EX28DRAFT_1828 at 1845.512 kb on - strand, within EX28DRAFT_1828 at 1845.512 kb on - strand, within EX28DRAFT_1828 at 1845.514 kb on + strand, within EX28DRAFT_1828 at 1845.527 kb on - strand, within EX28DRAFT_1828 at 1845.527 kb on - strand, within EX28DRAFT_1828
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,843,230 + EX28DRAFT_1824 0.60 +0.7 1,843,273 + EX28DRAFT_1824 0.65 -0.0 1,843,291 - EX28DRAFT_1824 0.67 +0.2 1,843,445 + EX28DRAFT_1824 0.86 +0.3 1,843,445 + EX28DRAFT_1824 0.86 -0.3 1,843,445 + EX28DRAFT_1824 0.86 -0.7 1,843,445 + EX28DRAFT_1824 0.86 +0.3 1,843,446 - EX28DRAFT_1824 0.86 -2.6 1,843,447 + EX28DRAFT_1824 0.86 -0.1 1,843,448 - EX28DRAFT_1824 0.86 -0.1 1,843,512 + -0.1 1,843,513 - -1.9 1,843,566 - -0.6 1,843,660 + EX28DRAFT_1825 0.18 +0.9 1,843,660 + EX28DRAFT_1825 0.18 +1.7 1,843,676 + EX28DRAFT_1825 0.21 -0.2 1,843,778 + EX28DRAFT_1825 0.36 -0.1 1,844,207 + +0.1 1,844,226 + -0.1 1,844,227 - +0.5 1,844,241 - EX28DRAFT_1826 0.11 +0.1 1,844,241 - EX28DRAFT_1826 0.11 +0.3 1,844,329 + EX28DRAFT_1826 0.34 +1.5 1,844,330 - EX28DRAFT_1826 0.35 +0.7 1,844,545 + -0.4 1,844,587 + +0.1 1,844,587 + -1.9 1,844,588 - -1.0 1,844,588 - +1.0 1,844,588 - -0.2 1,844,638 + EX28DRAFT_1827 0.17 -0.3 1,844,743 + EX28DRAFT_1827 0.46 -1.5 1,844,743 + EX28DRAFT_1827 0.46 -0.6 1,844,743 + EX28DRAFT_1827 0.46 -2.0 1,844,784 - EX28DRAFT_1827 0.58 -2.2 1,844,784 - EX28DRAFT_1827 0.58 -2.3 1,844,874 + EX28DRAFT_1827 0.83 -1.3 1,844,980 - +0.5 1,845,020 + -1.0 1,845,137 + -0.4 1,845,164 - +0.9 1,845,164 - +0.3 1,845,184 + +2.1 1,845,184 + +0.9 1,845,184 + +0.8 1,845,199 + +0.6 1,845,252 + +0.9 1,845,274 - +0.2 1,845,312 + +1.7 1,845,369 - EX28DRAFT_1828 0.13 +0.6 1,845,489 - EX28DRAFT_1828 0.21 +1.0 1,845,511 + EX28DRAFT_1828 0.23 +0.3 1,845,512 - EX28DRAFT_1828 0.23 -0.3 1,845,512 - EX28DRAFT_1828 0.23 +1.3 1,845,514 + EX28DRAFT_1828 0.23 +0.4 1,845,527 - EX28DRAFT_1828 0.24 +0.7 1,845,527 - EX28DRAFT_1828 0.24 +1.7
Or see this region's nucleotide sequence