Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1816 and EX28DRAFT_1817 are separated by 583 nucleotides EX28DRAFT_1817 and EX28DRAFT_1818 are separated by 75 nucleotides EX28DRAFT_1818 and EX28DRAFT_1819 are separated by 244 nucleotides
EX28DRAFT_1816: EX28DRAFT_1816 - transcription-repair coupling factor (mfd), at 1,832,579 to 1,836,025
_1816
EX28DRAFT_1817: EX28DRAFT_1817 - Uncharacterized protein conserved in bacteria, at 1,836,609 to 1,837,574
_1817
EX28DRAFT_1818: EX28DRAFT_1818 - Protein of unknown function (DUF1471), at 1,837,650 to 1,837,907
_1818
EX28DRAFT_1819: EX28DRAFT_1819 - transcriptional regulator, TetR family, at 1,838,152 to 1,838,787
_1819
Position (kb)
1836
1837
1838 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1835.657 kb on + strand, within EX28DRAFT_1816 at 1835.657 kb on + strand, within EX28DRAFT_1816 at 1835.658 kb on - strand, within EX28DRAFT_1816 at 1835.704 kb on + strand at 1835.704 kb on + strand at 1835.704 kb on + strand at 1835.705 kb on - strand at 1835.705 kb on - strand at 1835.705 kb on - strand at 1835.941 kb on + strand at 1835.986 kb on + strand at 1836.043 kb on - strand at 1836.061 kb on - strand at 1836.065 kb on + strand at 1836.110 kb on + strand at 1836.110 kb on + strand at 1836.110 kb on + strand at 1836.110 kb on + strand at 1836.111 kb on - strand at 1836.111 kb on - strand at 1836.244 kb on - strand at 1836.244 kb on - strand at 1836.350 kb on + strand at 1836.362 kb on + strand at 1836.362 kb on + strand at 1836.362 kb on + strand at 1836.392 kb on - strand at 1836.392 kb on - strand at 1836.503 kb on + strand at 1836.552 kb on + strand at 1836.557 kb on - strand at 1836.572 kb on + strand at 1836.846 kb on + strand, within EX28DRAFT_1817 at 1836.925 kb on + strand, within EX28DRAFT_1817 at 1836.948 kb on + strand, within EX28DRAFT_1817 at 1836.948 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.952 kb on - strand, within EX28DRAFT_1817 at 1836.952 kb on - strand, within EX28DRAFT_1817 at 1836.952 kb on - strand, within EX28DRAFT_1817 at 1836.985 kb on - strand, within EX28DRAFT_1817 at 1837.101 kb on + strand, within EX28DRAFT_1817 at 1837.104 kb on - strand, within EX28DRAFT_1817 at 1837.104 kb on - strand, within EX28DRAFT_1817 at 1837.200 kb on + strand, within EX28DRAFT_1817 at 1837.259 kb on + strand, within EX28DRAFT_1817 at 1837.260 kb on - strand, within EX28DRAFT_1817 at 1837.260 kb on - strand, within EX28DRAFT_1817 at 1837.295 kb on + strand, within EX28DRAFT_1817 at 1837.326 kb on - strand, within EX28DRAFT_1817 at 1837.328 kb on + strand, within EX28DRAFT_1817 at 1837.334 kb on + strand, within EX28DRAFT_1817 at 1837.335 kb on - strand, within EX28DRAFT_1817 at 1837.457 kb on - strand, within EX28DRAFT_1817 at 1837.457 kb on - strand, within EX28DRAFT_1817 at 1837.616 kb on - strand at 1837.652 kb on - strand at 1837.657 kb on + strand at 1837.662 kb on - strand at 1837.686 kb on - strand, within EX28DRAFT_1818 at 1837.707 kb on - strand, within EX28DRAFT_1818 at 1837.772 kb on + strand, within EX28DRAFT_1818 at 1837.793 kb on + strand, within EX28DRAFT_1818 at 1837.794 kb on - strand, within EX28DRAFT_1818 at 1837.805 kb on + strand, within EX28DRAFT_1818 at 1837.805 kb on + strand, within EX28DRAFT_1818 at 1837.836 kb on + strand, within EX28DRAFT_1818 at 1837.836 kb on + strand, within EX28DRAFT_1818 at 1837.914 kb on + strand at 1837.914 kb on + strand at 1837.915 kb on - strand at 1837.915 kb on - strand at 1837.966 kb on - strand at 1838.058 kb on - strand at 1838.288 kb on + strand, within EX28DRAFT_1819 at 1838.372 kb on - strand, within EX28DRAFT_1819 at 1838.372 kb on - strand, within EX28DRAFT_1819 at 1838.372 kb on - strand, within EX28DRAFT_1819 at 1838.505 kb on + strand, within EX28DRAFT_1819
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,835,657 + EX28DRAFT_1816 0.89 +0.8 1,835,657 + EX28DRAFT_1816 0.89 +0.3 1,835,658 - EX28DRAFT_1816 0.89 +0.7 1,835,704 + +0.6 1,835,704 + +0.5 1,835,704 + +1.2 1,835,705 - +0.5 1,835,705 - +0.1 1,835,705 - +0.1 1,835,941 + +0.7 1,835,986 + -0.4 1,836,043 - +0.0 1,836,061 - +0.3 1,836,065 + -0.6 1,836,110 + +2.0 1,836,110 + +0.9 1,836,110 + +0.7 1,836,110 + +0.2 1,836,111 - +1.1 1,836,111 - -0.6 1,836,244 - +0.9 1,836,244 - +0.4 1,836,350 + +0.4 1,836,362 + +0.0 1,836,362 + +0.5 1,836,362 + +0.2 1,836,392 - -1.7 1,836,392 - -0.0 1,836,503 + -0.0 1,836,552 + +0.5 1,836,557 - +0.1 1,836,572 + +0.2 1,836,846 + EX28DRAFT_1817 0.25 -0.4 1,836,925 + EX28DRAFT_1817 0.33 +0.3 1,836,948 + EX28DRAFT_1817 0.35 +0.1 1,836,948 + EX28DRAFT_1817 0.35 -0.4 1,836,951 + EX28DRAFT_1817 0.35 +1.0 1,836,951 + EX28DRAFT_1817 0.35 +0.3 1,836,951 + EX28DRAFT_1817 0.35 -0.3 1,836,951 + EX28DRAFT_1817 0.35 -0.1 1,836,951 + EX28DRAFT_1817 0.35 -0.2 1,836,952 - EX28DRAFT_1817 0.36 +0.7 1,836,952 - EX28DRAFT_1817 0.36 +0.5 1,836,952 - EX28DRAFT_1817 0.36 -0.5 1,836,985 - EX28DRAFT_1817 0.39 -1.3 1,837,101 + EX28DRAFT_1817 0.51 +0.1 1,837,104 - EX28DRAFT_1817 0.51 +1.0 1,837,104 - EX28DRAFT_1817 0.51 -0.4 1,837,200 + EX28DRAFT_1817 0.61 +0.7 1,837,259 + EX28DRAFT_1817 0.67 +0.4 1,837,260 - EX28DRAFT_1817 0.67 -0.0 1,837,260 - EX28DRAFT_1817 0.67 +0.9 1,837,295 + EX28DRAFT_1817 0.71 -0.3 1,837,326 - EX28DRAFT_1817 0.74 +0.0 1,837,328 + EX28DRAFT_1817 0.74 +1.4 1,837,334 + EX28DRAFT_1817 0.75 -0.5 1,837,335 - EX28DRAFT_1817 0.75 +0.2 1,837,457 - EX28DRAFT_1817 0.88 -0.6 1,837,457 - EX28DRAFT_1817 0.88 -1.1 1,837,616 - +0.1 1,837,652 - +0.4 1,837,657 + -0.2 1,837,662 - +1.1 1,837,686 - EX28DRAFT_1818 0.14 +0.2 1,837,707 - EX28DRAFT_1818 0.22 +0.0 1,837,772 + EX28DRAFT_1818 0.47 -1.0 1,837,793 + EX28DRAFT_1818 0.55 +2.1 1,837,794 - EX28DRAFT_1818 0.56 +4.0 1,837,805 + EX28DRAFT_1818 0.60 +0.7 1,837,805 + EX28DRAFT_1818 0.60 -0.6 1,837,836 + EX28DRAFT_1818 0.72 -0.7 1,837,836 + EX28DRAFT_1818 0.72 +1.2 1,837,914 + +0.1 1,837,914 + -0.1 1,837,915 - -1.6 1,837,915 - -0.6 1,837,966 - -2.5 1,838,058 - +0.4 1,838,288 + EX28DRAFT_1819 0.21 +0.8 1,838,372 - EX28DRAFT_1819 0.35 -0.3 1,838,372 - EX28DRAFT_1819 0.35 -2.0 1,838,372 - EX28DRAFT_1819 0.35 -0.6 1,838,505 + EX28DRAFT_1819 0.56 -0.3
Or see this region's nucleotide sequence