Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1810

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1809 and EX28DRAFT_1810 are separated by 45 nucleotidesEX28DRAFT_1810 and EX28DRAFT_1811 are separated by 14 nucleotidesEX28DRAFT_1811 and EX28DRAFT_1812 are separated by 53 nucleotides EX28DRAFT_1809: EX28DRAFT_1809 - Methyl-accepting chemotaxis protein, at 1,824,184 to 1,826,115 _1809 EX28DRAFT_1810: EX28DRAFT_1810 - NAD-dependent protein deacetylases, SIR2 family, at 1,826,161 to 1,826,982 _1810 EX28DRAFT_1811: EX28DRAFT_1811 - Transcriptional regulator/sugar kinase, at 1,826,997 to 1,827,908 _1811 EX28DRAFT_1812: EX28DRAFT_1812 - lipoprotein releasing system, transmembrane protein LolE, at 1,827,962 to 1,829,206 _1812 Position (kb) 1826 1827Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1825.201 kb on - strand, within EX28DRAFT_1809at 1825.368 kb on + strand, within EX28DRAFT_1809at 1825.391 kb on + strand, within EX28DRAFT_1809at 1825.515 kb on + strand, within EX28DRAFT_1809at 1825.638 kb on + strand, within EX28DRAFT_1809at 1826.007 kb on + strandat 1826.077 kb on - strandat 1826.113 kb on + strandat 1826.113 kb on + strandat 1826.117 kb on + strandat 1826.219 kb on + strandat 1826.278 kb on - strand, within EX28DRAFT_1810at 1826.278 kb on - strand, within EX28DRAFT_1810at 1826.352 kb on + strand, within EX28DRAFT_1810at 1826.382 kb on - strand, within EX28DRAFT_1810at 1826.466 kb on + strand, within EX28DRAFT_1810at 1826.467 kb on - strand, within EX28DRAFT_1810at 1826.467 kb on - strand, within EX28DRAFT_1810at 1826.480 kb on - strand, within EX28DRAFT_1810at 1826.754 kb on + strand, within EX28DRAFT_1810at 1826.982 kb on + strandat 1826.983 kb on - strandat 1826.983 kb on - strandat 1826.993 kb on + strandat 1826.998 kb on + strandat 1827.090 kb on + strand, within EX28DRAFT_1811at 1827.090 kb on + strand, within EX28DRAFT_1811at 1827.192 kb on - strand, within EX28DRAFT_1811at 1827.192 kb on - strand, within EX28DRAFT_1811at 1827.273 kb on - strand, within EX28DRAFT_1811at 1827.304 kb on + strand, within EX28DRAFT_1811at 1827.305 kb on - strand, within EX28DRAFT_1811at 1827.305 kb on - strand, within EX28DRAFT_1811at 1827.347 kb on - strand, within EX28DRAFT_1811at 1827.347 kb on - strand, within EX28DRAFT_1811at 1827.347 kb on - strand, within EX28DRAFT_1811at 1827.460 kb on + strand, within EX28DRAFT_1811at 1827.590 kb on + strand, within EX28DRAFT_1811at 1827.603 kb on + strand, within EX28DRAFT_1811at 1827.604 kb on - strand, within EX28DRAFT_1811at 1827.682 kb on + strand, within EX28DRAFT_1811at 1827.683 kb on - strand, within EX28DRAFT_1811at 1827.904 kb on + strandat 1827.905 kb on - strandat 1827.909 kb on - strandat 1827.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,825,201 - EX28DRAFT_1809 0.53 -0.7
1,825,368 + EX28DRAFT_1809 0.61 +0.2
1,825,391 + EX28DRAFT_1809 0.62 -0.3
1,825,515 + EX28DRAFT_1809 0.69 +0.7
1,825,638 + EX28DRAFT_1809 0.75 -1.1
1,826,007 + -0.2
1,826,077 - +0.2
1,826,113 + -0.3
1,826,113 + +0.5
1,826,117 + -1.3
1,826,219 + -0.2
1,826,278 - EX28DRAFT_1810 0.14 +1.3
1,826,278 - EX28DRAFT_1810 0.14 +0.4
1,826,352 + EX28DRAFT_1810 0.23 -0.5
1,826,382 - EX28DRAFT_1810 0.27 +1.0
1,826,466 + EX28DRAFT_1810 0.37 +0.9
1,826,467 - EX28DRAFT_1810 0.37 +0.7
1,826,467 - EX28DRAFT_1810 0.37 +0.2
1,826,480 - EX28DRAFT_1810 0.39 +1.3
1,826,754 + EX28DRAFT_1810 0.72 +0.3
1,826,982 + +0.8
1,826,983 - +0.3
1,826,983 - +0.3
1,826,993 + +0.1
1,826,998 + -3.3
1,827,090 + EX28DRAFT_1811 0.10 +1.3
1,827,090 + EX28DRAFT_1811 0.10 +0.4
1,827,192 - EX28DRAFT_1811 0.21 -0.5
1,827,192 - EX28DRAFT_1811 0.21 -0.6
1,827,273 - EX28DRAFT_1811 0.30 -0.5
1,827,304 + EX28DRAFT_1811 0.34 +2.1
1,827,305 - EX28DRAFT_1811 0.34 -0.4
1,827,305 - EX28DRAFT_1811 0.34 -0.3
1,827,347 - EX28DRAFT_1811 0.38 +0.2
1,827,347 - EX28DRAFT_1811 0.38 -0.3
1,827,347 - EX28DRAFT_1811 0.38 -0.1
1,827,460 + EX28DRAFT_1811 0.51 -1.1
1,827,590 + EX28DRAFT_1811 0.65 +0.5
1,827,603 + EX28DRAFT_1811 0.66 +1.3
1,827,604 - EX28DRAFT_1811 0.67 +0.0
1,827,682 + EX28DRAFT_1811 0.75 -0.3
1,827,683 - EX28DRAFT_1811 0.75 +0.5
1,827,904 + +0.0
1,827,905 - -0.5
1,827,909 - +0.6
1,827,948 - -0.0

Or see this region's nucleotide sequence