Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1805

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1804 and EX28DRAFT_1805 overlap by 17 nucleotidesEX28DRAFT_1805 and EX28DRAFT_1806 overlap by 4 nucleotidesEX28DRAFT_1806 and EX28DRAFT_1807 overlap by 4 nucleotides EX28DRAFT_1804: EX28DRAFT_1804 - spermidine/putrescine ABC transporter ATP-binding subunit, at 1,818,926 to 1,820,011 _1804 EX28DRAFT_1805: EX28DRAFT_1805 - ABC-type spermidine/putrescine transport system, permease component I, at 1,819,995 to 1,820,852 _1805 EX28DRAFT_1806: EX28DRAFT_1806 - ABC-type spermidine/putrescine transport system, permease component II, at 1,820,849 to 1,821,640 _1806 EX28DRAFT_1807: EX28DRAFT_1807 - Spermidine/putrescine-binding periplasmic protein, at 1,821,637 to 1,822,671 _1807 Position (kb) 1819 1820 1821Strain fitness (log2 ratio) -1 0 1 2 3at 1819.150 kb on + strand, within EX28DRAFT_1804at 1819.167 kb on - strand, within EX28DRAFT_1804at 1819.445 kb on - strand, within EX28DRAFT_1804at 1819.445 kb on - strand, within EX28DRAFT_1804at 1819.581 kb on - strand, within EX28DRAFT_1804at 1819.630 kb on + strand, within EX28DRAFT_1804at 1819.631 kb on - strand, within EX28DRAFT_1804at 1819.705 kb on + strand, within EX28DRAFT_1804at 1819.839 kb on - strand, within EX28DRAFT_1804at 1820.152 kb on - strand, within EX28DRAFT_1805at 1820.152 kb on - strand, within EX28DRAFT_1805at 1820.379 kb on + strand, within EX28DRAFT_1805at 1820.417 kb on + strand, within EX28DRAFT_1805at 1820.469 kb on + strand, within EX28DRAFT_1805at 1820.469 kb on + strand, within EX28DRAFT_1805at 1820.469 kb on + strand, within EX28DRAFT_1805at 1820.470 kb on - strand, within EX28DRAFT_1805at 1820.470 kb on - strand, within EX28DRAFT_1805at 1820.470 kb on - strand, within EX28DRAFT_1805at 1820.591 kb on + strand, within EX28DRAFT_1805at 1820.637 kb on - strand, within EX28DRAFT_1805at 1820.661 kb on + strand, within EX28DRAFT_1805at 1820.831 kb on + strandat 1820.892 kb on - strandat 1820.897 kb on + strandat 1820.898 kb on - strandat 1820.898 kb on - strandat 1820.903 kb on + strandat 1820.903 kb on + strandat 1820.903 kb on + strandat 1820.903 kb on + strandat 1820.960 kb on - strand, within EX28DRAFT_1806at 1820.975 kb on - strand, within EX28DRAFT_1806at 1820.987 kb on + strand, within EX28DRAFT_1806at 1821.205 kb on + strand, within EX28DRAFT_1806at 1821.421 kb on + strand, within EX28DRAFT_1806at 1821.503 kb on + strand, within EX28DRAFT_1806at 1821.504 kb on - strand, within EX28DRAFT_1806at 1821.733 kb on + strandat 1821.800 kb on - strand, within EX28DRAFT_1807at 1821.820 kb on + strand, within EX28DRAFT_1807at 1821.820 kb on + strand, within EX28DRAFT_1807at 1821.821 kb on - strand, within EX28DRAFT_1807

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,819,150 + EX28DRAFT_1804 0.21 -1.2
1,819,167 - EX28DRAFT_1804 0.22 +0.5
1,819,445 - EX28DRAFT_1804 0.48 +1.0
1,819,445 - EX28DRAFT_1804 0.48 -0.4
1,819,581 - EX28DRAFT_1804 0.60 +0.1
1,819,630 + EX28DRAFT_1804 0.65 +1.4
1,819,631 - EX28DRAFT_1804 0.65 -0.4
1,819,705 + EX28DRAFT_1804 0.72 +1.6
1,819,839 - EX28DRAFT_1804 0.84 +0.2
1,820,152 - EX28DRAFT_1805 0.18 +0.9
1,820,152 - EX28DRAFT_1805 0.18 +0.5
1,820,379 + EX28DRAFT_1805 0.45 +1.2
1,820,417 + EX28DRAFT_1805 0.49 +0.7
1,820,469 + EX28DRAFT_1805 0.55 +0.6
1,820,469 + EX28DRAFT_1805 0.55 -0.1
1,820,469 + EX28DRAFT_1805 0.55 -0.9
1,820,470 - EX28DRAFT_1805 0.55 +0.8
1,820,470 - EX28DRAFT_1805 0.55 +0.6
1,820,470 - EX28DRAFT_1805 0.55 +1.2
1,820,591 + EX28DRAFT_1805 0.69 +0.4
1,820,637 - EX28DRAFT_1805 0.75 +0.1
1,820,661 + EX28DRAFT_1805 0.78 +0.3
1,820,831 + -0.1
1,820,892 - -1.2
1,820,897 + +0.4
1,820,898 - -0.7
1,820,898 - -0.8
1,820,903 + +0.1
1,820,903 + -1.5
1,820,903 + +0.9
1,820,903 + +0.6
1,820,960 - EX28DRAFT_1806 0.14 +0.3
1,820,975 - EX28DRAFT_1806 0.16 +0.6
1,820,987 + EX28DRAFT_1806 0.17 -0.0
1,821,205 + EX28DRAFT_1806 0.45 +0.4
1,821,421 + EX28DRAFT_1806 0.72 +0.7
1,821,503 + EX28DRAFT_1806 0.83 +2.9
1,821,504 - EX28DRAFT_1806 0.83 +0.4
1,821,733 + +0.1
1,821,800 - EX28DRAFT_1807 0.16 +1.6
1,821,820 + EX28DRAFT_1807 0.18 +1.5
1,821,820 + EX28DRAFT_1807 0.18 +0.8
1,821,821 - EX28DRAFT_1807 0.18 +2.1

Or see this region's nucleotide sequence