Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1804 and EX28DRAFT_1805 overlap by 17 nucleotides EX28DRAFT_1805 and EX28DRAFT_1806 overlap by 4 nucleotides EX28DRAFT_1806 and EX28DRAFT_1807 overlap by 4 nucleotides
EX28DRAFT_1804: EX28DRAFT_1804 - spermidine/putrescine ABC transporter ATP-binding subunit, at 1,818,926 to 1,820,011
_1804
EX28DRAFT_1805: EX28DRAFT_1805 - ABC-type spermidine/putrescine transport system, permease component I, at 1,819,995 to 1,820,852
_1805
EX28DRAFT_1806: EX28DRAFT_1806 - ABC-type spermidine/putrescine transport system, permease component II, at 1,820,849 to 1,821,640
_1806
EX28DRAFT_1807: EX28DRAFT_1807 - Spermidine/putrescine-binding periplasmic protein, at 1,821,637 to 1,822,671
_1807
Position (kb)
1819
1820
1821 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1819.150 kb on + strand, within EX28DRAFT_1804 at 1819.167 kb on - strand, within EX28DRAFT_1804 at 1819.445 kb on - strand, within EX28DRAFT_1804 at 1819.445 kb on - strand, within EX28DRAFT_1804 at 1819.581 kb on - strand, within EX28DRAFT_1804 at 1819.630 kb on + strand, within EX28DRAFT_1804 at 1819.631 kb on - strand, within EX28DRAFT_1804 at 1819.705 kb on + strand, within EX28DRAFT_1804 at 1819.839 kb on - strand, within EX28DRAFT_1804 at 1820.152 kb on - strand, within EX28DRAFT_1805 at 1820.152 kb on - strand, within EX28DRAFT_1805 at 1820.379 kb on + strand, within EX28DRAFT_1805 at 1820.417 kb on + strand, within EX28DRAFT_1805 at 1820.469 kb on + strand, within EX28DRAFT_1805 at 1820.469 kb on + strand, within EX28DRAFT_1805 at 1820.469 kb on + strand, within EX28DRAFT_1805 at 1820.470 kb on - strand, within EX28DRAFT_1805 at 1820.470 kb on - strand, within EX28DRAFT_1805 at 1820.470 kb on - strand, within EX28DRAFT_1805 at 1820.591 kb on + strand, within EX28DRAFT_1805 at 1820.637 kb on - strand, within EX28DRAFT_1805 at 1820.661 kb on + strand, within EX28DRAFT_1805 at 1820.831 kb on + strand at 1820.892 kb on - strand at 1820.897 kb on + strand at 1820.898 kb on - strand at 1820.898 kb on - strand at 1820.903 kb on + strand at 1820.903 kb on + strand at 1820.903 kb on + strand at 1820.903 kb on + strand at 1820.960 kb on - strand, within EX28DRAFT_1806 at 1820.975 kb on - strand, within EX28DRAFT_1806 at 1820.987 kb on + strand, within EX28DRAFT_1806 at 1821.205 kb on + strand, within EX28DRAFT_1806 at 1821.421 kb on + strand, within EX28DRAFT_1806 at 1821.503 kb on + strand, within EX28DRAFT_1806 at 1821.504 kb on - strand, within EX28DRAFT_1806 at 1821.733 kb on + strand at 1821.800 kb on - strand, within EX28DRAFT_1807 at 1821.820 kb on + strand, within EX28DRAFT_1807 at 1821.820 kb on + strand, within EX28DRAFT_1807 at 1821.821 kb on - strand, within EX28DRAFT_1807
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,819,150 + EX28DRAFT_1804 0.21 -1.2 1,819,167 - EX28DRAFT_1804 0.22 +0.5 1,819,445 - EX28DRAFT_1804 0.48 +1.0 1,819,445 - EX28DRAFT_1804 0.48 -0.4 1,819,581 - EX28DRAFT_1804 0.60 +0.1 1,819,630 + EX28DRAFT_1804 0.65 +1.4 1,819,631 - EX28DRAFT_1804 0.65 -0.4 1,819,705 + EX28DRAFT_1804 0.72 +1.6 1,819,839 - EX28DRAFT_1804 0.84 +0.2 1,820,152 - EX28DRAFT_1805 0.18 +0.9 1,820,152 - EX28DRAFT_1805 0.18 +0.5 1,820,379 + EX28DRAFT_1805 0.45 +1.2 1,820,417 + EX28DRAFT_1805 0.49 +0.7 1,820,469 + EX28DRAFT_1805 0.55 +0.6 1,820,469 + EX28DRAFT_1805 0.55 -0.1 1,820,469 + EX28DRAFT_1805 0.55 -0.9 1,820,470 - EX28DRAFT_1805 0.55 +0.8 1,820,470 - EX28DRAFT_1805 0.55 +0.6 1,820,470 - EX28DRAFT_1805 0.55 +1.2 1,820,591 + EX28DRAFT_1805 0.69 +0.4 1,820,637 - EX28DRAFT_1805 0.75 +0.1 1,820,661 + EX28DRAFT_1805 0.78 +0.3 1,820,831 + -0.1 1,820,892 - -1.2 1,820,897 + +0.4 1,820,898 - -0.7 1,820,898 - -0.8 1,820,903 + +0.1 1,820,903 + -1.5 1,820,903 + +0.9 1,820,903 + +0.6 1,820,960 - EX28DRAFT_1806 0.14 +0.3 1,820,975 - EX28DRAFT_1806 0.16 +0.6 1,820,987 + EX28DRAFT_1806 0.17 -0.0 1,821,205 + EX28DRAFT_1806 0.45 +0.4 1,821,421 + EX28DRAFT_1806 0.72 +0.7 1,821,503 + EX28DRAFT_1806 0.83 +2.9 1,821,504 - EX28DRAFT_1806 0.83 +0.4 1,821,733 + +0.1 1,821,800 - EX28DRAFT_1807 0.16 +1.6 1,821,820 + EX28DRAFT_1807 0.18 +1.5 1,821,820 + EX28DRAFT_1807 0.18 +0.8 1,821,821 - EX28DRAFT_1807 0.18 +2.1
Or see this region's nucleotide sequence