Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1738 and EX28DRAFT_1739 are separated by 109 nucleotides EX28DRAFT_1739 and EX28DRAFT_1740 are separated by 29 nucleotides EX28DRAFT_1740 and EX28DRAFT_1741 are separated by 47 nucleotides
EX28DRAFT_1738: EX28DRAFT_1738 - Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases, at 1,753,400 to 1,754,755
_1738
EX28DRAFT_1739: EX28DRAFT_1739 - Helix-turn-helix domain/Cupin domain, at 1,754,865 to 1,755,683
_1739
EX28DRAFT_1740: EX28DRAFT_1740 - Phosphotransferase system cellobiose-specific component IIA, at 1,755,713 to 1,756,060
_1740
EX28DRAFT_1741: EX28DRAFT_1741 - phosphotransferase system, cellobiose specific, IIC component, at 1,756,108 to 1,757,466
_1741
Position (kb) 1755
1756
1757 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1754.796 kb on - strand at 1754.796 kb on - strand at 1754.798 kb on - strand at 1754.871 kb on - strand at 1754.871 kb on - strand at 1754.871 kb on - strand at 1754.989 kb on + strand, within EX28DRAFT_1739 at 1754.990 kb on - strand, within EX28DRAFT_1739 at 1755.122 kb on + strand, within EX28DRAFT_1739 at 1755.155 kb on + strand, within EX28DRAFT_1739 at 1755.251 kb on - strand, within EX28DRAFT_1739 at 1755.333 kb on - strand, within EX28DRAFT_1739 at 1755.394 kb on + strand, within EX28DRAFT_1739 at 1755.394 kb on + strand, within EX28DRAFT_1739 at 1755.395 kb on - strand, within EX28DRAFT_1739 at 1755.575 kb on - strand, within EX28DRAFT_1739 at 1755.578 kb on - strand, within EX28DRAFT_1739 at 1755.578 kb on - strand, within EX28DRAFT_1739 at 1755.623 kb on + strand at 1755.954 kb on + strand, within EX28DRAFT_1740 at 1756.042 kb on + strand at 1756.109 kb on + strand at 1756.199 kb on + strand at 1756.199 kb on + strand at 1756.199 kb on + strand at 1756.199 kb on + strand at 1756.200 kb on - strand at 1756.200 kb on - strand at 1756.337 kb on + strand, within EX28DRAFT_1741 at 1756.337 kb on + strand, within EX28DRAFT_1741 at 1756.338 kb on - strand, within EX28DRAFT_1741 at 1756.563 kb on + strand, within EX28DRAFT_1741 at 1756.565 kb on + strand, within EX28DRAFT_1741 at 1756.565 kb on + strand, within EX28DRAFT_1741 at 1756.565 kb on + strand, within EX28DRAFT_1741 at 1756.565 kb on + strand, within EX28DRAFT_1741 at 1756.566 kb on - strand, within EX28DRAFT_1741 at 1756.566 kb on - strand, within EX28DRAFT_1741 at 1756.681 kb on - strand, within EX28DRAFT_1741 at 1756.758 kb on - strand, within EX28DRAFT_1741 at 1756.803 kb on + strand, within EX28DRAFT_1741 at 1756.804 kb on - strand, within EX28DRAFT_1741 at 1756.882 kb on - strand, within EX28DRAFT_1741 at 1756.971 kb on + strand, within EX28DRAFT_1741 at 1756.971 kb on + strand, within EX28DRAFT_1741 at 1756.971 kb on + strand, within EX28DRAFT_1741 at 1756.972 kb on - strand, within EX28DRAFT_1741 at 1757.058 kb on - strand, within EX28DRAFT_1741
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,754,796 - +1.5 1,754,796 - -0.6 1,754,798 - +0.3 1,754,871 - -2.3 1,754,871 - +0.0 1,754,871 - +0.2 1,754,989 + EX28DRAFT_1739 0.15 +0.6 1,754,990 - EX28DRAFT_1739 0.15 -0.1 1,755,122 + EX28DRAFT_1739 0.31 +0.2 1,755,155 + EX28DRAFT_1739 0.35 -0.0 1,755,251 - EX28DRAFT_1739 0.47 -1.1 1,755,333 - EX28DRAFT_1739 0.57 -0.7 1,755,394 + EX28DRAFT_1739 0.65 -2.9 1,755,394 + EX28DRAFT_1739 0.65 -0.2 1,755,395 - EX28DRAFT_1739 0.65 -0.6 1,755,575 - EX28DRAFT_1739 0.87 -0.3 1,755,578 - EX28DRAFT_1739 0.87 +0.7 1,755,578 - EX28DRAFT_1739 0.87 +0.1 1,755,623 + -1.5 1,755,954 + EX28DRAFT_1740 0.69 -0.5 1,756,042 + +1.6 1,756,109 + +0.4 1,756,199 + -1.1 1,756,199 + -0.8 1,756,199 + -0.4 1,756,199 + -0.2 1,756,200 - +0.2 1,756,200 - +0.6 1,756,337 + EX28DRAFT_1741 0.17 +0.9 1,756,337 + EX28DRAFT_1741 0.17 -0.4 1,756,338 - EX28DRAFT_1741 0.17 -0.2 1,756,563 + EX28DRAFT_1741 0.33 -0.1 1,756,565 + EX28DRAFT_1741 0.34 +0.0 1,756,565 + EX28DRAFT_1741 0.34 +0.2 1,756,565 + EX28DRAFT_1741 0.34 +0.5 1,756,565 + EX28DRAFT_1741 0.34 +0.4 1,756,566 - EX28DRAFT_1741 0.34 -0.3 1,756,566 - EX28DRAFT_1741 0.34 -0.8 1,756,681 - EX28DRAFT_1741 0.42 -2.1 1,756,758 - EX28DRAFT_1741 0.48 -0.0 1,756,803 + EX28DRAFT_1741 0.51 +0.5 1,756,804 - EX28DRAFT_1741 0.51 -0.2 1,756,882 - EX28DRAFT_1741 0.57 -0.1 1,756,971 + EX28DRAFT_1741 0.64 -0.7 1,756,971 + EX28DRAFT_1741 0.64 +0.6 1,756,971 + EX28DRAFT_1741 0.64 +0.2 1,756,972 - EX28DRAFT_1741 0.64 +0.5 1,757,058 - EX28DRAFT_1741 0.70 -0.8
Or see this region's nucleotide sequence