Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1705 and EX28DRAFT_1706 are separated by 152 nucleotides EX28DRAFT_1706 and EX28DRAFT_1707 are separated by 19 nucleotides
EX28DRAFT_1705: EX28DRAFT_1705 - Uncharacterized protein conserved in bacteria, at 1,721,554 to 1,722,387
_1705
EX28DRAFT_1706: EX28DRAFT_1706 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 1,722,540 to 1,723,586
_1706
EX28DRAFT_1707: EX28DRAFT_1707 - Transcriptional regulator, at 1,723,606 to 1,724,508
_1707
Position (kb)
1722
1723
1724 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1721.584 kb on + strand at 1721.732 kb on - strand, within EX28DRAFT_1705 at 1721.764 kb on + strand, within EX28DRAFT_1705 at 1721.764 kb on + strand, within EX28DRAFT_1705 at 1721.764 kb on + strand, within EX28DRAFT_1705 at 1721.764 kb on + strand, within EX28DRAFT_1705 at 1721.764 kb on + strand, within EX28DRAFT_1705 at 1721.764 kb on + strand, within EX28DRAFT_1705 at 1721.765 kb on - strand, within EX28DRAFT_1705 at 1721.765 kb on - strand, within EX28DRAFT_1705 at 1721.769 kb on + strand, within EX28DRAFT_1705 at 1721.770 kb on - strand, within EX28DRAFT_1705 at 1721.925 kb on + strand, within EX28DRAFT_1705 at 1721.925 kb on + strand, within EX28DRAFT_1705 at 1721.957 kb on - strand, within EX28DRAFT_1705 at 1722.058 kb on + strand, within EX28DRAFT_1705 at 1722.322 kb on + strand at 1722.323 kb on - strand at 1722.323 kb on - strand at 1722.396 kb on + strand at 1722.416 kb on + strand at 1722.545 kb on + strand at 1722.546 kb on - strand at 1722.546 kb on - strand at 1722.751 kb on - strand, within EX28DRAFT_1706 at 1722.817 kb on - strand, within EX28DRAFT_1706 at 1722.928 kb on + strand, within EX28DRAFT_1706 at 1722.929 kb on - strand, within EX28DRAFT_1706 at 1723.197 kb on + strand, within EX28DRAFT_1706 at 1723.198 kb on - strand, within EX28DRAFT_1706 at 1723.232 kb on + strand, within EX28DRAFT_1706 at 1723.233 kb on - strand, within EX28DRAFT_1706 at 1723.257 kb on + strand, within EX28DRAFT_1706 at 1723.257 kb on + strand, within EX28DRAFT_1706 at 1723.271 kb on + strand, within EX28DRAFT_1706 at 1723.571 kb on - strand at 1723.669 kb on - strand at 1723.680 kb on + strand at 1723.680 kb on + strand at 1723.680 kb on + strand at 1723.680 kb on + strand at 1723.681 kb on - strand at 1723.738 kb on - strand, within EX28DRAFT_1707 at 1724.173 kb on + strand, within EX28DRAFT_1707 at 1724.173 kb on + strand, within EX28DRAFT_1707 at 1724.173 kb on + strand, within EX28DRAFT_1707 at 1724.244 kb on + strand, within EX28DRAFT_1707 at 1724.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,721,584 + +1.4 1,721,732 - EX28DRAFT_1705 0.21 +0.3 1,721,764 + EX28DRAFT_1705 0.25 +0.7 1,721,764 + EX28DRAFT_1705 0.25 +0.1 1,721,764 + EX28DRAFT_1705 0.25 -1.1 1,721,764 + EX28DRAFT_1705 0.25 -0.0 1,721,764 + EX28DRAFT_1705 0.25 -0.0 1,721,764 + EX28DRAFT_1705 0.25 -1.5 1,721,765 - EX28DRAFT_1705 0.25 +0.1 1,721,765 - EX28DRAFT_1705 0.25 -0.2 1,721,769 + EX28DRAFT_1705 0.26 -0.4 1,721,770 - EX28DRAFT_1705 0.26 -1.1 1,721,925 + EX28DRAFT_1705 0.44 +0.4 1,721,925 + EX28DRAFT_1705 0.44 -0.0 1,721,957 - EX28DRAFT_1705 0.48 -0.2 1,722,058 + EX28DRAFT_1705 0.60 -2.8 1,722,322 + -0.8 1,722,323 - -0.1 1,722,323 - +0.0 1,722,396 + +0.6 1,722,416 + -0.9 1,722,545 + +0.2 1,722,546 - +0.2 1,722,546 - -0.0 1,722,751 - EX28DRAFT_1706 0.20 -0.2 1,722,817 - EX28DRAFT_1706 0.26 +0.8 1,722,928 + EX28DRAFT_1706 0.37 +0.0 1,722,929 - EX28DRAFT_1706 0.37 +2.3 1,723,197 + EX28DRAFT_1706 0.63 -0.4 1,723,198 - EX28DRAFT_1706 0.63 +1.3 1,723,232 + EX28DRAFT_1706 0.66 +0.0 1,723,233 - EX28DRAFT_1706 0.66 -0.3 1,723,257 + EX28DRAFT_1706 0.68 -0.3 1,723,257 + EX28DRAFT_1706 0.68 +0.1 1,723,271 + EX28DRAFT_1706 0.70 +0.7 1,723,571 - -2.1 1,723,669 - -0.7 1,723,680 + +0.7 1,723,680 + +0.1 1,723,680 + -0.3 1,723,680 + +0.5 1,723,681 - -1.2 1,723,738 - EX28DRAFT_1707 0.15 -0.0 1,724,173 + EX28DRAFT_1707 0.63 +0.0 1,724,173 + EX28DRAFT_1707 0.63 -0.3 1,724,173 + EX28DRAFT_1707 0.63 -0.6 1,724,244 + EX28DRAFT_1707 0.71 -0.5 1,724,467 + -1.2
Or see this region's nucleotide sequence