Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1681 and EX28DRAFT_1682 are separated by 97 nucleotides EX28DRAFT_1682 and EX28DRAFT_1683 are separated by 14 nucleotides
EX28DRAFT_1681: EX28DRAFT_1681 - Uncharacterized protein conserved in bacteria, at 1,693,680 to 1,694,693
_1681
EX28DRAFT_1682: EX28DRAFT_1682 - SufE protein probably involved in Fe-S center assembly, at 1,694,791 to 1,695,207
_1682
EX28DRAFT_1683: EX28DRAFT_1683 - cysteine desulfurases, SufSfamily, at 1,695,222 to 1,696,442
_1683
Position (kb)
1694
1695
1696 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1693.946 kb on + strand, within EX28DRAFT_1681 at 1693.948 kb on + strand, within EX28DRAFT_1681 at 1693.948 kb on + strand, within EX28DRAFT_1681 at 1694.039 kb on + strand, within EX28DRAFT_1681 at 1694.040 kb on - strand, within EX28DRAFT_1681 at 1694.064 kb on - strand, within EX28DRAFT_1681 at 1694.089 kb on - strand, within EX28DRAFT_1681 at 1694.122 kb on + strand, within EX28DRAFT_1681 at 1694.365 kb on + strand, within EX28DRAFT_1681 at 1694.366 kb on - strand, within EX28DRAFT_1681 at 1694.366 kb on - strand, within EX28DRAFT_1681 at 1694.366 kb on - strand, within EX28DRAFT_1681 at 1694.391 kb on + strand, within EX28DRAFT_1681 at 1694.483 kb on + strand, within EX28DRAFT_1681 at 1694.503 kb on - strand, within EX28DRAFT_1681 at 1694.503 kb on - strand, within EX28DRAFT_1681 at 1694.546 kb on + strand, within EX28DRAFT_1681 at 1694.547 kb on - strand, within EX28DRAFT_1681 at 1694.569 kb on + strand, within EX28DRAFT_1681 at 1694.639 kb on + strand at 1694.667 kb on + strand at 1694.667 kb on + strand at 1694.668 kb on - strand at 1694.668 kb on - strand at 1694.673 kb on + strand at 1694.673 kb on + strand at 1694.673 kb on + strand at 1694.674 kb on - strand at 1694.674 kb on - strand at 1694.676 kb on + strand at 1694.676 kb on + strand at 1694.787 kb on - strand at 1694.792 kb on + strand at 1694.792 kb on + strand at 1694.793 kb on - strand at 1694.796 kb on + strand at 1694.950 kb on - strand, within EX28DRAFT_1682 at 1694.974 kb on + strand, within EX28DRAFT_1682 at 1694.974 kb on + strand, within EX28DRAFT_1682 at 1695.129 kb on + strand, within EX28DRAFT_1682 at 1695.130 kb on - strand, within EX28DRAFT_1682 at 1695.130 kb on - strand, within EX28DRAFT_1682 at 1695.130 kb on - strand, within EX28DRAFT_1682 at 1695.131 kb on + strand, within EX28DRAFT_1682 at 1695.132 kb on - strand, within EX28DRAFT_1682 at 1695.132 kb on - strand, within EX28DRAFT_1682 at 1695.132 kb on - strand, within EX28DRAFT_1682 at 1695.132 kb on - strand, within EX28DRAFT_1682 at 1695.137 kb on + strand, within EX28DRAFT_1682 at 1695.138 kb on - strand, within EX28DRAFT_1682 at 1695.138 kb on - strand, within EX28DRAFT_1682 at 1695.243 kb on - strand at 1695.289 kb on + strand at 1695.290 kb on - strand at 1695.328 kb on + strand at 1695.329 kb on - strand at 1695.383 kb on - strand, within EX28DRAFT_1683 at 1695.409 kb on + strand, within EX28DRAFT_1683 at 1695.409 kb on + strand, within EX28DRAFT_1683 at 1695.542 kb on + strand, within EX28DRAFT_1683 at 1695.542 kb on + strand, within EX28DRAFT_1683 at 1695.543 kb on - strand, within EX28DRAFT_1683 at 1695.565 kb on + strand, within EX28DRAFT_1683 at 1695.565 kb on + strand, within EX28DRAFT_1683 at 1695.565 kb on + strand, within EX28DRAFT_1683 at 1695.566 kb on - strand, within EX28DRAFT_1683 at 1695.566 kb on - strand, within EX28DRAFT_1683 at 1695.666 kb on + strand, within EX28DRAFT_1683 at 1696.136 kb on + strand, within EX28DRAFT_1683 at 1696.142 kb on + strand, within EX28DRAFT_1683 at 1696.143 kb on - strand, within EX28DRAFT_1683
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,693,946 + EX28DRAFT_1681 0.26 +1.9 1,693,948 + EX28DRAFT_1681 0.26 +0.1 1,693,948 + EX28DRAFT_1681 0.26 +1.3 1,694,039 + EX28DRAFT_1681 0.35 -0.1 1,694,040 - EX28DRAFT_1681 0.36 +0.4 1,694,064 - EX28DRAFT_1681 0.38 -0.3 1,694,089 - EX28DRAFT_1681 0.40 -0.0 1,694,122 + EX28DRAFT_1681 0.44 -1.3 1,694,365 + EX28DRAFT_1681 0.68 -2.3 1,694,366 - EX28DRAFT_1681 0.68 +0.8 1,694,366 - EX28DRAFT_1681 0.68 -0.1 1,694,366 - EX28DRAFT_1681 0.68 -1.8 1,694,391 + EX28DRAFT_1681 0.70 -1.2 1,694,483 + EX28DRAFT_1681 0.79 +1.3 1,694,503 - EX28DRAFT_1681 0.81 +1.3 1,694,503 - EX28DRAFT_1681 0.81 +0.2 1,694,546 + EX28DRAFT_1681 0.85 -1.8 1,694,547 - EX28DRAFT_1681 0.86 -0.0 1,694,569 + EX28DRAFT_1681 0.88 -0.3 1,694,639 + -0.2 1,694,667 + -0.6 1,694,667 + +0.0 1,694,668 - +0.2 1,694,668 - +0.6 1,694,673 + +0.0 1,694,673 + -1.0 1,694,673 + -0.9 1,694,674 - -0.7 1,694,674 - +0.6 1,694,676 + +0.2 1,694,676 + -0.1 1,694,787 - -0.2 1,694,792 + +0.1 1,694,792 + -3.1 1,694,793 - +0.3 1,694,796 + -0.9 1,694,950 - EX28DRAFT_1682 0.38 -1.7 1,694,974 + EX28DRAFT_1682 0.44 -3.9 1,694,974 + EX28DRAFT_1682 0.44 -2.8 1,695,129 + EX28DRAFT_1682 0.81 -1.6 1,695,130 - EX28DRAFT_1682 0.81 -2.3 1,695,130 - EX28DRAFT_1682 0.81 -1.7 1,695,130 - EX28DRAFT_1682 0.81 -4.5 1,695,131 + EX28DRAFT_1682 0.82 -2.1 1,695,132 - EX28DRAFT_1682 0.82 -2.2 1,695,132 - EX28DRAFT_1682 0.82 -1.3 1,695,132 - EX28DRAFT_1682 0.82 -1.9 1,695,132 - EX28DRAFT_1682 0.82 -2.0 1,695,137 + EX28DRAFT_1682 0.83 +0.8 1,695,138 - EX28DRAFT_1682 0.83 -2.0 1,695,138 - EX28DRAFT_1682 0.83 -2.9 1,695,243 - -0.9 1,695,289 + -2.3 1,695,290 - -1.2 1,695,328 + -2.4 1,695,329 - -2.5 1,695,383 - EX28DRAFT_1683 0.13 -2.1 1,695,409 + EX28DRAFT_1683 0.15 -2.4 1,695,409 + EX28DRAFT_1683 0.15 -2.2 1,695,542 + EX28DRAFT_1683 0.26 -0.9 1,695,542 + EX28DRAFT_1683 0.26 -0.8 1,695,543 - EX28DRAFT_1683 0.26 -3.8 1,695,565 + EX28DRAFT_1683 0.28 -0.6 1,695,565 + EX28DRAFT_1683 0.28 -2.0 1,695,565 + EX28DRAFT_1683 0.28 -0.6 1,695,566 - EX28DRAFT_1683 0.28 -2.3 1,695,566 - EX28DRAFT_1683 0.28 -2.0 1,695,666 + EX28DRAFT_1683 0.36 -3.7 1,696,136 + EX28DRAFT_1683 0.75 -1.7 1,696,142 + EX28DRAFT_1683 0.75 -0.7 1,696,143 - EX28DRAFT_1683 0.75 -1.4
Or see this region's nucleotide sequence