Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1673 and EX28DRAFT_1674 are separated by 110 nucleotides EX28DRAFT_1674 and EX28DRAFT_1675 are separated by 27 nucleotides EX28DRAFT_1675 and EX28DRAFT_1676 overlap by 8 nucleotides
EX28DRAFT_1673: EX28DRAFT_1673 - Protein of unknown function (DUF2767), at 1,685,503 to 1,685,712
_1673
EX28DRAFT_1674: EX28DRAFT_1674 - ABC-type metal ion transport system, periplasmic component/surface antigen, at 1,685,823 to 1,686,635
_1674
EX28DRAFT_1675: EX28DRAFT_1675 - ABC-type metal ion transport system, permease component, at 1,686,663 to 1,687,331
_1675
EX28DRAFT_1676: EX28DRAFT_1676 - ABC-type metal ion transport system, ATPase component, at 1,687,324 to 1,688,346
_1676
Position (kb)
1686
1687
1688 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1685.682 kb on - strand, within EX28DRAFT_1673 at 1685.734 kb on + strand at 1685.748 kb on - strand at 1685.748 kb on - strand at 1685.854 kb on + strand at 1685.855 kb on - strand at 1686.031 kb on + strand, within EX28DRAFT_1674 at 1686.074 kb on - strand, within EX28DRAFT_1674 at 1686.301 kb on + strand, within EX28DRAFT_1674 at 1686.301 kb on + strand, within EX28DRAFT_1674 at 1686.349 kb on + strand, within EX28DRAFT_1674 at 1686.374 kb on + strand, within EX28DRAFT_1674 at 1686.375 kb on - strand, within EX28DRAFT_1674 at 1686.375 kb on - strand, within EX28DRAFT_1674 at 1686.375 kb on - strand, within EX28DRAFT_1674 at 1686.378 kb on + strand, within EX28DRAFT_1674 at 1686.378 kb on + strand, within EX28DRAFT_1674 at 1686.378 kb on + strand, within EX28DRAFT_1674 at 1686.378 kb on + strand, within EX28DRAFT_1674 at 1686.378 kb on + strand, within EX28DRAFT_1674 at 1686.379 kb on - strand, within EX28DRAFT_1674 at 1686.379 kb on - strand, within EX28DRAFT_1674 at 1686.379 kb on - strand, within EX28DRAFT_1674 at 1686.379 kb on - strand, within EX28DRAFT_1674 at 1686.392 kb on - strand, within EX28DRAFT_1674 at 1686.409 kb on + strand, within EX28DRAFT_1674 at 1686.458 kb on - strand, within EX28DRAFT_1674 at 1686.473 kb on + strand, within EX28DRAFT_1674 at 1686.473 kb on + strand, within EX28DRAFT_1674 at 1686.542 kb on + strand, within EX28DRAFT_1674 at 1686.655 kb on - strand at 1686.658 kb on - strand at 1686.664 kb on + strand at 1686.665 kb on - strand at 1686.675 kb on + strand at 1686.686 kb on + strand at 1686.686 kb on + strand at 1686.687 kb on - strand at 1686.866 kb on + strand, within EX28DRAFT_1675 at 1686.957 kb on + strand, within EX28DRAFT_1675 at 1686.957 kb on + strand, within EX28DRAFT_1675 at 1686.957 kb on + strand, within EX28DRAFT_1675 at 1686.957 kb on + strand, within EX28DRAFT_1675 at 1686.958 kb on - strand, within EX28DRAFT_1675 at 1686.958 kb on - strand, within EX28DRAFT_1675 at 1686.958 kb on - strand, within EX28DRAFT_1675 at 1686.958 kb on - strand, within EX28DRAFT_1675 at 1687.006 kb on + strand, within EX28DRAFT_1675 at 1687.007 kb on - strand, within EX28DRAFT_1675 at 1687.264 kb on + strand, within EX28DRAFT_1675 at 1687.264 kb on + strand, within EX28DRAFT_1675 at 1687.336 kb on - strand at 1687.414 kb on + strand at 1687.415 kb on - strand at 1688.142 kb on + strand, within EX28DRAFT_1676 at 1688.238 kb on + strand, within EX28DRAFT_1676 at 1688.328 kb on + strand at 1688.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,685,682 - EX28DRAFT_1673 0.85 -0.2 1,685,734 + +0.5 1,685,748 - -0.2 1,685,748 - -0.4 1,685,854 + +0.3 1,685,855 - -1.4 1,686,031 + EX28DRAFT_1674 0.26 -2.0 1,686,074 - EX28DRAFT_1674 0.31 +0.3 1,686,301 + EX28DRAFT_1674 0.59 +0.5 1,686,301 + EX28DRAFT_1674 0.59 +0.2 1,686,349 + EX28DRAFT_1674 0.65 -0.9 1,686,374 + EX28DRAFT_1674 0.68 +0.2 1,686,375 - EX28DRAFT_1674 0.68 +0.2 1,686,375 - EX28DRAFT_1674 0.68 +0.3 1,686,375 - EX28DRAFT_1674 0.68 -1.4 1,686,378 + EX28DRAFT_1674 0.68 -0.5 1,686,378 + EX28DRAFT_1674 0.68 -0.6 1,686,378 + EX28DRAFT_1674 0.68 -0.3 1,686,378 + EX28DRAFT_1674 0.68 -0.0 1,686,378 + EX28DRAFT_1674 0.68 +0.0 1,686,379 - EX28DRAFT_1674 0.68 -4.1 1,686,379 - EX28DRAFT_1674 0.68 -2.0 1,686,379 - EX28DRAFT_1674 0.68 -1.5 1,686,379 - EX28DRAFT_1674 0.68 -2.2 1,686,392 - EX28DRAFT_1674 0.70 -0.3 1,686,409 + EX28DRAFT_1674 0.72 -0.5 1,686,458 - EX28DRAFT_1674 0.78 -3.6 1,686,473 + EX28DRAFT_1674 0.80 +0.3 1,686,473 + EX28DRAFT_1674 0.80 +0.3 1,686,542 + EX28DRAFT_1674 0.88 +0.2 1,686,655 - +0.4 1,686,658 - -0.1 1,686,664 + +0.4 1,686,665 - -0.0 1,686,675 + -3.1 1,686,686 + +0.3 1,686,686 + -0.6 1,686,687 - -0.0 1,686,866 + EX28DRAFT_1675 0.30 -0.9 1,686,957 + EX28DRAFT_1675 0.44 +0.3 1,686,957 + EX28DRAFT_1675 0.44 -0.9 1,686,957 + EX28DRAFT_1675 0.44 -0.7 1,686,957 + EX28DRAFT_1675 0.44 +0.1 1,686,958 - EX28DRAFT_1675 0.44 -0.6 1,686,958 - EX28DRAFT_1675 0.44 -0.7 1,686,958 - EX28DRAFT_1675 0.44 -2.9 1,686,958 - EX28DRAFT_1675 0.44 +0.1 1,687,006 + EX28DRAFT_1675 0.51 -2.9 1,687,007 - EX28DRAFT_1675 0.51 +0.0 1,687,264 + EX28DRAFT_1675 0.90 +0.2 1,687,264 + EX28DRAFT_1675 0.90 -1.2 1,687,336 - +0.1 1,687,414 + -0.4 1,687,415 - -0.9 1,688,142 + EX28DRAFT_1676 0.80 +0.1 1,688,238 + EX28DRAFT_1676 0.89 -0.3 1,688,328 + +0.1 1,688,329 - -0.1
Or see this region's nucleotide sequence