Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1675

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1673 and EX28DRAFT_1674 are separated by 110 nucleotidesEX28DRAFT_1674 and EX28DRAFT_1675 are separated by 27 nucleotidesEX28DRAFT_1675 and EX28DRAFT_1676 overlap by 8 nucleotides EX28DRAFT_1673: EX28DRAFT_1673 - Protein of unknown function (DUF2767), at 1,685,503 to 1,685,712 _1673 EX28DRAFT_1674: EX28DRAFT_1674 - ABC-type metal ion transport system, periplasmic component/surface antigen, at 1,685,823 to 1,686,635 _1674 EX28DRAFT_1675: EX28DRAFT_1675 - ABC-type metal ion transport system, permease component, at 1,686,663 to 1,687,331 _1675 EX28DRAFT_1676: EX28DRAFT_1676 - ABC-type metal ion transport system, ATPase component, at 1,687,324 to 1,688,346 _1676 Position (kb) 1686 1687 1688Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1685.682 kb on - strand, within EX28DRAFT_1673at 1685.734 kb on + strandat 1685.748 kb on - strandat 1685.748 kb on - strandat 1685.854 kb on + strandat 1685.855 kb on - strandat 1686.031 kb on + strand, within EX28DRAFT_1674at 1686.074 kb on - strand, within EX28DRAFT_1674at 1686.301 kb on + strand, within EX28DRAFT_1674at 1686.301 kb on + strand, within EX28DRAFT_1674at 1686.349 kb on + strand, within EX28DRAFT_1674at 1686.374 kb on + strand, within EX28DRAFT_1674at 1686.375 kb on - strand, within EX28DRAFT_1674at 1686.375 kb on - strand, within EX28DRAFT_1674at 1686.375 kb on - strand, within EX28DRAFT_1674at 1686.378 kb on + strand, within EX28DRAFT_1674at 1686.378 kb on + strand, within EX28DRAFT_1674at 1686.378 kb on + strand, within EX28DRAFT_1674at 1686.378 kb on + strand, within EX28DRAFT_1674at 1686.378 kb on + strand, within EX28DRAFT_1674at 1686.379 kb on - strand, within EX28DRAFT_1674at 1686.379 kb on - strand, within EX28DRAFT_1674at 1686.379 kb on - strand, within EX28DRAFT_1674at 1686.379 kb on - strand, within EX28DRAFT_1674at 1686.392 kb on - strand, within EX28DRAFT_1674at 1686.409 kb on + strand, within EX28DRAFT_1674at 1686.458 kb on - strand, within EX28DRAFT_1674at 1686.473 kb on + strand, within EX28DRAFT_1674at 1686.473 kb on + strand, within EX28DRAFT_1674at 1686.542 kb on + strand, within EX28DRAFT_1674at 1686.655 kb on - strandat 1686.658 kb on - strandat 1686.664 kb on + strandat 1686.665 kb on - strandat 1686.675 kb on + strandat 1686.686 kb on + strandat 1686.686 kb on + strandat 1686.687 kb on - strandat 1686.866 kb on + strand, within EX28DRAFT_1675at 1686.957 kb on + strand, within EX28DRAFT_1675at 1686.957 kb on + strand, within EX28DRAFT_1675at 1686.957 kb on + strand, within EX28DRAFT_1675at 1686.957 kb on + strand, within EX28DRAFT_1675at 1686.958 kb on - strand, within EX28DRAFT_1675at 1686.958 kb on - strand, within EX28DRAFT_1675at 1686.958 kb on - strand, within EX28DRAFT_1675at 1686.958 kb on - strand, within EX28DRAFT_1675at 1687.006 kb on + strand, within EX28DRAFT_1675at 1687.007 kb on - strand, within EX28DRAFT_1675at 1687.264 kb on + strand, within EX28DRAFT_1675at 1687.264 kb on + strand, within EX28DRAFT_1675at 1687.336 kb on - strandat 1687.414 kb on + strandat 1687.415 kb on - strandat 1688.142 kb on + strand, within EX28DRAFT_1676at 1688.238 kb on + strand, within EX28DRAFT_1676at 1688.328 kb on + strandat 1688.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,685,682 - EX28DRAFT_1673 0.85 -0.2
1,685,734 + +0.5
1,685,748 - -0.2
1,685,748 - -0.4
1,685,854 + +0.3
1,685,855 - -1.4
1,686,031 + EX28DRAFT_1674 0.26 -2.0
1,686,074 - EX28DRAFT_1674 0.31 +0.3
1,686,301 + EX28DRAFT_1674 0.59 +0.5
1,686,301 + EX28DRAFT_1674 0.59 +0.2
1,686,349 + EX28DRAFT_1674 0.65 -0.9
1,686,374 + EX28DRAFT_1674 0.68 +0.2
1,686,375 - EX28DRAFT_1674 0.68 +0.2
1,686,375 - EX28DRAFT_1674 0.68 +0.3
1,686,375 - EX28DRAFT_1674 0.68 -1.4
1,686,378 + EX28DRAFT_1674 0.68 -0.5
1,686,378 + EX28DRAFT_1674 0.68 -0.6
1,686,378 + EX28DRAFT_1674 0.68 -0.3
1,686,378 + EX28DRAFT_1674 0.68 -0.0
1,686,378 + EX28DRAFT_1674 0.68 +0.0
1,686,379 - EX28DRAFT_1674 0.68 -4.1
1,686,379 - EX28DRAFT_1674 0.68 -2.0
1,686,379 - EX28DRAFT_1674 0.68 -1.5
1,686,379 - EX28DRAFT_1674 0.68 -2.2
1,686,392 - EX28DRAFT_1674 0.70 -0.3
1,686,409 + EX28DRAFT_1674 0.72 -0.5
1,686,458 - EX28DRAFT_1674 0.78 -3.6
1,686,473 + EX28DRAFT_1674 0.80 +0.3
1,686,473 + EX28DRAFT_1674 0.80 +0.3
1,686,542 + EX28DRAFT_1674 0.88 +0.2
1,686,655 - +0.4
1,686,658 - -0.1
1,686,664 + +0.4
1,686,665 - -0.0
1,686,675 + -3.1
1,686,686 + +0.3
1,686,686 + -0.6
1,686,687 - -0.0
1,686,866 + EX28DRAFT_1675 0.30 -0.9
1,686,957 + EX28DRAFT_1675 0.44 +0.3
1,686,957 + EX28DRAFT_1675 0.44 -0.9
1,686,957 + EX28DRAFT_1675 0.44 -0.7
1,686,957 + EX28DRAFT_1675 0.44 +0.1
1,686,958 - EX28DRAFT_1675 0.44 -0.6
1,686,958 - EX28DRAFT_1675 0.44 -0.7
1,686,958 - EX28DRAFT_1675 0.44 -2.9
1,686,958 - EX28DRAFT_1675 0.44 +0.1
1,687,006 + EX28DRAFT_1675 0.51 -2.9
1,687,007 - EX28DRAFT_1675 0.51 +0.0
1,687,264 + EX28DRAFT_1675 0.90 +0.2
1,687,264 + EX28DRAFT_1675 0.90 -1.2
1,687,336 - +0.1
1,687,414 + -0.4
1,687,415 - -0.9
1,688,142 + EX28DRAFT_1676 0.80 +0.1
1,688,238 + EX28DRAFT_1676 0.89 -0.3
1,688,328 + +0.1
1,688,329 - -0.1

Or see this region's nucleotide sequence