Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1673

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1671 and EX28DRAFT_1672 overlap by 17 nucleotidesEX28DRAFT_1672 and EX28DRAFT_1673 overlap by 20 nucleotidesEX28DRAFT_1673 and EX28DRAFT_1674 are separated by 110 nucleotidesEX28DRAFT_1674 and EX28DRAFT_1675 are separated by 27 nucleotides EX28DRAFT_1671: EX28DRAFT_1671 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,684,076 to 1,684,852 _1671 EX28DRAFT_1672: EX28DRAFT_1672 - ABC-type amino acid transport system, permease component, at 1,684,836 to 1,685,522 _1672 EX28DRAFT_1673: EX28DRAFT_1673 - Protein of unknown function (DUF2767), at 1,685,503 to 1,685,712 _1673 EX28DRAFT_1674: EX28DRAFT_1674 - ABC-type metal ion transport system, periplasmic component/surface antigen, at 1,685,823 to 1,686,635 _1674 EX28DRAFT_1675: EX28DRAFT_1675 - ABC-type metal ion transport system, permease component, at 1,686,663 to 1,687,331 _1675 Position (kb) 1685 1686Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1684.612 kb on + strand, within EX28DRAFT_1671at 1684.691 kb on + strand, within EX28DRAFT_1671at 1684.691 kb on + strand, within EX28DRAFT_1671at 1684.692 kb on - strand, within EX28DRAFT_1671at 1684.692 kb on - strand, within EX28DRAFT_1671at 1684.692 kb on - strand, within EX28DRAFT_1671at 1684.693 kb on + strand, within EX28DRAFT_1671at 1684.717 kb on + strand, within EX28DRAFT_1671at 1684.764 kb on + strand, within EX28DRAFT_1671at 1684.764 kb on + strand, within EX28DRAFT_1671at 1684.875 kb on + strandat 1684.875 kb on + strandat 1684.976 kb on - strand, within EX28DRAFT_1672at 1685.088 kb on + strand, within EX28DRAFT_1672at 1685.088 kb on + strand, within EX28DRAFT_1672at 1685.159 kb on + strand, within EX28DRAFT_1672at 1685.221 kb on - strand, within EX28DRAFT_1672at 1685.298 kb on - strand, within EX28DRAFT_1672at 1685.342 kb on + strand, within EX28DRAFT_1672at 1685.342 kb on + strand, within EX28DRAFT_1672at 1685.343 kb on - strand, within EX28DRAFT_1672at 1685.455 kb on - strandat 1685.455 kb on - strandat 1685.610 kb on + strand, within EX28DRAFT_1673at 1685.611 kb on - strand, within EX28DRAFT_1673at 1685.611 kb on - strand, within EX28DRAFT_1673at 1685.682 kb on - strand, within EX28DRAFT_1673at 1685.734 kb on + strandat 1685.748 kb on - strandat 1685.748 kb on - strandat 1685.854 kb on + strandat 1685.855 kb on - strandat 1686.031 kb on + strand, within EX28DRAFT_1674at 1686.074 kb on - strand, within EX28DRAFT_1674at 1686.301 kb on + strand, within EX28DRAFT_1674at 1686.301 kb on + strand, within EX28DRAFT_1674at 1686.349 kb on + strand, within EX28DRAFT_1674at 1686.374 kb on + strand, within EX28DRAFT_1674at 1686.375 kb on - strand, within EX28DRAFT_1674at 1686.375 kb on - strand, within EX28DRAFT_1674at 1686.375 kb on - strand, within EX28DRAFT_1674at 1686.378 kb on + strand, within EX28DRAFT_1674at 1686.378 kb on + strand, within EX28DRAFT_1674at 1686.378 kb on + strand, within EX28DRAFT_1674at 1686.378 kb on + strand, within EX28DRAFT_1674at 1686.378 kb on + strand, within EX28DRAFT_1674at 1686.379 kb on - strand, within EX28DRAFT_1674at 1686.379 kb on - strand, within EX28DRAFT_1674at 1686.379 kb on - strand, within EX28DRAFT_1674at 1686.379 kb on - strand, within EX28DRAFT_1674at 1686.392 kb on - strand, within EX28DRAFT_1674at 1686.409 kb on + strand, within EX28DRAFT_1674at 1686.458 kb on - strand, within EX28DRAFT_1674at 1686.473 kb on + strand, within EX28DRAFT_1674at 1686.473 kb on + strand, within EX28DRAFT_1674at 1686.542 kb on + strand, within EX28DRAFT_1674at 1686.655 kb on - strandat 1686.658 kb on - strandat 1686.664 kb on + strandat 1686.665 kb on - strandat 1686.675 kb on + strandat 1686.686 kb on + strandat 1686.686 kb on + strandat 1686.687 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,684,612 + EX28DRAFT_1671 0.69 +0.2
1,684,691 + EX28DRAFT_1671 0.79 +0.5
1,684,691 + EX28DRAFT_1671 0.79 -1.1
1,684,692 - EX28DRAFT_1671 0.79 -2.1
1,684,692 - EX28DRAFT_1671 0.79 -0.0
1,684,692 - EX28DRAFT_1671 0.79 +0.5
1,684,693 + EX28DRAFT_1671 0.79 +0.0
1,684,717 + EX28DRAFT_1671 0.82 -0.2
1,684,764 + EX28DRAFT_1671 0.89 +0.1
1,684,764 + EX28DRAFT_1671 0.89 -0.1
1,684,875 + +0.3
1,684,875 + -0.1
1,684,976 - EX28DRAFT_1672 0.20 +1.4
1,685,088 + EX28DRAFT_1672 0.37 -1.6
1,685,088 + EX28DRAFT_1672 0.37 -0.9
1,685,159 + EX28DRAFT_1672 0.47 +1.0
1,685,221 - EX28DRAFT_1672 0.56 +0.2
1,685,298 - EX28DRAFT_1672 0.67 +0.4
1,685,342 + EX28DRAFT_1672 0.74 -0.8
1,685,342 + EX28DRAFT_1672 0.74 +0.8
1,685,343 - EX28DRAFT_1672 0.74 +0.3
1,685,455 - +0.4
1,685,455 - +0.1
1,685,610 + EX28DRAFT_1673 0.51 +1.5
1,685,611 - EX28DRAFT_1673 0.51 +1.1
1,685,611 - EX28DRAFT_1673 0.51 -0.2
1,685,682 - EX28DRAFT_1673 0.85 -0.2
1,685,734 + +0.5
1,685,748 - -0.2
1,685,748 - -0.4
1,685,854 + +0.3
1,685,855 - -1.4
1,686,031 + EX28DRAFT_1674 0.26 -2.0
1,686,074 - EX28DRAFT_1674 0.31 +0.3
1,686,301 + EX28DRAFT_1674 0.59 +0.5
1,686,301 + EX28DRAFT_1674 0.59 +0.2
1,686,349 + EX28DRAFT_1674 0.65 -0.9
1,686,374 + EX28DRAFT_1674 0.68 +0.2
1,686,375 - EX28DRAFT_1674 0.68 +0.2
1,686,375 - EX28DRAFT_1674 0.68 +0.3
1,686,375 - EX28DRAFT_1674 0.68 -1.4
1,686,378 + EX28DRAFT_1674 0.68 -0.5
1,686,378 + EX28DRAFT_1674 0.68 -0.6
1,686,378 + EX28DRAFT_1674 0.68 -0.3
1,686,378 + EX28DRAFT_1674 0.68 -0.0
1,686,378 + EX28DRAFT_1674 0.68 +0.0
1,686,379 - EX28DRAFT_1674 0.68 -4.1
1,686,379 - EX28DRAFT_1674 0.68 -2.0
1,686,379 - EX28DRAFT_1674 0.68 -1.5
1,686,379 - EX28DRAFT_1674 0.68 -2.2
1,686,392 - EX28DRAFT_1674 0.70 -0.3
1,686,409 + EX28DRAFT_1674 0.72 -0.5
1,686,458 - EX28DRAFT_1674 0.78 -3.6
1,686,473 + EX28DRAFT_1674 0.80 +0.3
1,686,473 + EX28DRAFT_1674 0.80 +0.3
1,686,542 + EX28DRAFT_1674 0.88 +0.2
1,686,655 - +0.4
1,686,658 - -0.1
1,686,664 + +0.4
1,686,665 - -0.0
1,686,675 + -3.1
1,686,686 + +0.3
1,686,686 + -0.6
1,686,687 - -0.0

Or see this region's nucleotide sequence