Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1657 and EX28DRAFT_1658 are separated by 297 nucleotides EX28DRAFT_1658 and EX28DRAFT_1659 are separated by 30 nucleotides EX28DRAFT_1659 and EX28DRAFT_1660 are separated by 237 nucleotides
EX28DRAFT_1657: EX28DRAFT_1657 - drug resistance transporter, Bcr/CflA subfamily, at 1,673,193 to 1,674,392
_1657
EX28DRAFT_1658: EX28DRAFT_1658 - Cyclopropane fatty acid synthase and related methyltransferases, at 1,674,690 to 1,675,838
_1658
EX28DRAFT_1659: EX28DRAFT_1659 - riboflavin synthase alpha chain (EC 2.5.1.9), at 1,675,869 to 1,676,513
_1659
EX28DRAFT_1660: EX28DRAFT_1660 - putative efflux protein, MATE family, at 1,676,751 to 1,678,112
_1660
Position (kb)
1674
1675
1676 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1673.707 kb on + strand, within EX28DRAFT_1657 at 1673.829 kb on + strand, within EX28DRAFT_1657 at 1673.830 kb on - strand, within EX28DRAFT_1657 at 1673.926 kb on - strand, within EX28DRAFT_1657 at 1674.028 kb on - strand, within EX28DRAFT_1657 at 1674.469 kb on + strand at 1674.469 kb on + strand at 1674.469 kb on + strand at 1674.470 kb on - strand at 1674.475 kb on - strand at 1674.493 kb on + strand at 1674.494 kb on - strand at 1674.502 kb on + strand at 1674.506 kb on - strand at 1674.506 kb on - strand at 1674.645 kb on + strand at 1674.656 kb on - strand at 1674.673 kb on - strand at 1674.673 kb on - strand at 1674.689 kb on + strand at 1674.706 kb on + strand at 1674.706 kb on + strand at 1674.706 kb on + strand at 1674.761 kb on - strand at 1674.780 kb on - strand at 1674.856 kb on + strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.873 kb on + strand, within EX28DRAFT_1658 at 1674.873 kb on + strand, within EX28DRAFT_1658 at 1674.873 kb on + strand, within EX28DRAFT_1658 at 1674.874 kb on - strand, within EX28DRAFT_1658 at 1674.874 kb on - strand, within EX28DRAFT_1658 at 1674.875 kb on + strand, within EX28DRAFT_1658 at 1675.013 kb on + strand, within EX28DRAFT_1658 at 1675.033 kb on + strand, within EX28DRAFT_1658 at 1675.034 kb on - strand, within EX28DRAFT_1658 at 1675.048 kb on - strand, within EX28DRAFT_1658 at 1675.098 kb on + strand, within EX28DRAFT_1658 at 1675.098 kb on + strand, within EX28DRAFT_1658 at 1675.166 kb on + strand, within EX28DRAFT_1658 at 1675.177 kb on + strand, within EX28DRAFT_1658 at 1675.178 kb on - strand, within EX28DRAFT_1658 at 1675.236 kb on + strand, within EX28DRAFT_1658 at 1675.255 kb on - strand, within EX28DRAFT_1658 at 1675.425 kb on + strand, within EX28DRAFT_1658 at 1675.434 kb on + strand, within EX28DRAFT_1658 at 1675.434 kb on + strand, within EX28DRAFT_1658 at 1675.539 kb on + strand, within EX28DRAFT_1658 at 1675.539 kb on + strand, within EX28DRAFT_1658 at 1675.540 kb on - strand, within EX28DRAFT_1658 at 1675.704 kb on + strand, within EX28DRAFT_1658 at 1675.704 kb on + strand, within EX28DRAFT_1658 at 1675.730 kb on + strand at 1675.730 kb on + strand at 1675.730 kb on + strand at 1675.731 kb on - strand at 1675.731 kb on - strand at 1675.734 kb on + strand at 1675.734 kb on + strand at 1675.735 kb on - strand at 1675.735 kb on - strand at 1675.735 kb on - strand at 1675.795 kb on + strand at 1675.796 kb on - strand at 1675.822 kb on + strand at 1675.863 kb on + strand at 1675.896 kb on + strand at 1676.628 kb on + strand at 1676.628 kb on + strand at 1676.629 kb on - strand at 1676.629 kb on - strand at 1676.629 kb on - strand at 1676.629 kb on - strand at 1676.632 kb on + strand at 1676.647 kb on - strand at 1676.647 kb on - strand at 1676.651 kb on + strand at 1676.652 kb on - strand at 1676.716 kb on - strand at 1676.726 kb on + strand at 1676.727 kb on - strand at 1676.770 kb on + strand at 1676.771 kb on - strand at 1676.783 kb on + strand at 1676.784 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,673,707 + EX28DRAFT_1657 0.43 +0.4 1,673,829 + EX28DRAFT_1657 0.53 +0.4 1,673,830 - EX28DRAFT_1657 0.53 +0.7 1,673,926 - EX28DRAFT_1657 0.61 -0.9 1,674,028 - EX28DRAFT_1657 0.70 -0.3 1,674,469 + -1.2 1,674,469 + -0.4 1,674,469 + -1.9 1,674,470 - +0.2 1,674,475 - -0.1 1,674,493 + -0.4 1,674,494 - +1.0 1,674,502 + -0.3 1,674,506 - -0.8 1,674,506 - -3.0 1,674,645 + -1.1 1,674,656 - -1.8 1,674,673 - -0.3 1,674,673 - +0.3 1,674,689 + -4.1 1,674,706 + -2.4 1,674,706 + -1.4 1,674,706 + -0.7 1,674,761 - -2.8 1,674,780 - -0.8 1,674,856 + EX28DRAFT_1658 0.14 -1.0 1,674,857 - EX28DRAFT_1658 0.15 -2.6 1,674,857 - EX28DRAFT_1658 0.15 -3.8 1,674,857 - EX28DRAFT_1658 0.15 +0.1 1,674,857 - EX28DRAFT_1658 0.15 -0.6 1,674,873 + EX28DRAFT_1658 0.16 -2.6 1,674,873 + EX28DRAFT_1658 0.16 -1.1 1,674,873 + EX28DRAFT_1658 0.16 -1.1 1,674,874 - EX28DRAFT_1658 0.16 -2.1 1,674,874 - EX28DRAFT_1658 0.16 -1.2 1,674,875 + EX28DRAFT_1658 0.16 -0.8 1,675,013 + EX28DRAFT_1658 0.28 -0.4 1,675,033 + EX28DRAFT_1658 0.30 +0.3 1,675,034 - EX28DRAFT_1658 0.30 -1.8 1,675,048 - EX28DRAFT_1658 0.31 -0.8 1,675,098 + EX28DRAFT_1658 0.36 -0.3 1,675,098 + EX28DRAFT_1658 0.36 -1.1 1,675,166 + EX28DRAFT_1658 0.41 +0.3 1,675,177 + EX28DRAFT_1658 0.42 -0.4 1,675,178 - EX28DRAFT_1658 0.42 -3.1 1,675,236 + EX28DRAFT_1658 0.48 -2.1 1,675,255 - EX28DRAFT_1658 0.49 -1.6 1,675,425 + EX28DRAFT_1658 0.64 -3.4 1,675,434 + EX28DRAFT_1658 0.65 +3.0 1,675,434 + EX28DRAFT_1658 0.65 -1.3 1,675,539 + EX28DRAFT_1658 0.74 -1.5 1,675,539 + EX28DRAFT_1658 0.74 -1.4 1,675,540 - EX28DRAFT_1658 0.74 -1.4 1,675,704 + EX28DRAFT_1658 0.88 -1.5 1,675,704 + EX28DRAFT_1658 0.88 -1.0 1,675,730 + +1.0 1,675,730 + -1.0 1,675,730 + -2.2 1,675,731 - +0.0 1,675,731 - -3.2 1,675,734 + -0.9 1,675,734 + -0.2 1,675,735 - -3.0 1,675,735 - -1.1 1,675,735 - -1.2 1,675,795 + -2.4 1,675,796 - +1.0 1,675,822 + -1.0 1,675,863 + +0.2 1,675,896 + -0.3 1,676,628 + -0.8 1,676,628 + -0.5 1,676,629 - +0.5 1,676,629 - -0.4 1,676,629 - -0.0 1,676,629 - -0.3 1,676,632 + -0.7 1,676,647 - -0.8 1,676,647 - +0.0 1,676,651 + -1.7 1,676,652 - -0.2 1,676,716 - -0.1 1,676,726 + +0.1 1,676,727 - -0.7 1,676,770 + +0.0 1,676,771 - -0.4 1,676,783 + -2.0 1,676,784 - -0.4
Or see this region's nucleotide sequence