Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1636 and EX28DRAFT_1637 are separated by 255 nucleotides EX28DRAFT_1637 and EX28DRAFT_1638 are separated by 199 nucleotides
EX28DRAFT_1636: EX28DRAFT_1636 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 1,653,374 to 1,654,498
_1636
EX28DRAFT_1637: EX28DRAFT_1637 - Outer membrane lipoprotein, at 1,654,754 to 1,655,221
_1637
EX28DRAFT_1638: EX28DRAFT_1638 - diguanylate cyclase (GGDEF) domain, at 1,655,421 to 1,656,782
_1638
Position (kb)
1654
1655
1656 Strain fitness (log2 ratio)
-2
-1
0
1 at 1653.816 kb on - strand, within EX28DRAFT_1636 at 1653.816 kb on - strand, within EX28DRAFT_1636 at 1653.880 kb on - strand, within EX28DRAFT_1636 at 1653.880 kb on - strand, within EX28DRAFT_1636 at 1653.923 kb on - strand, within EX28DRAFT_1636 at 1654.109 kb on + strand, within EX28DRAFT_1636 at 1654.112 kb on + strand, within EX28DRAFT_1636 at 1654.445 kb on + strand at 1654.445 kb on + strand at 1654.446 kb on - strand at 1654.483 kb on - strand at 1654.510 kb on - strand at 1654.581 kb on + strand at 1654.619 kb on - strand at 1654.628 kb on + strand at 1654.655 kb on - strand at 1654.660 kb on + strand at 1654.671 kb on + strand at 1654.671 kb on + strand at 1654.672 kb on - strand at 1654.678 kb on + strand at 1654.678 kb on + strand at 1654.678 kb on + strand at 1654.679 kb on - strand at 1654.689 kb on - strand at 1654.697 kb on + strand at 1654.697 kb on + strand at 1654.698 kb on - strand at 1654.698 kb on - strand at 1654.702 kb on + strand at 1654.767 kb on + strand at 1654.877 kb on + strand, within EX28DRAFT_1637 at 1654.877 kb on + strand, within EX28DRAFT_1637 at 1654.878 kb on - strand, within EX28DRAFT_1637 at 1654.906 kb on - strand, within EX28DRAFT_1637 at 1654.979 kb on - strand, within EX28DRAFT_1637 at 1655.088 kb on + strand, within EX28DRAFT_1637 at 1655.088 kb on + strand, within EX28DRAFT_1637 at 1655.133 kb on + strand, within EX28DRAFT_1637 at 1655.134 kb on - strand, within EX28DRAFT_1637 at 1655.223 kb on + strand at 1655.223 kb on + strand at 1655.312 kb on + strand at 1655.327 kb on - strand at 1655.350 kb on + strand at 1655.401 kb on + strand at 1655.419 kb on - strand at 1655.420 kb on + strand at 1655.421 kb on - strand at 1655.421 kb on - strand at 1655.424 kb on + strand at 1655.425 kb on - strand at 1655.425 kb on - strand at 1655.454 kb on + strand at 1655.455 kb on - strand at 1655.478 kb on - strand at 1655.478 kb on - strand at 1655.497 kb on + strand at 1655.619 kb on + strand, within EX28DRAFT_1638 at 1655.772 kb on + strand, within EX28DRAFT_1638 at 1655.772 kb on + strand, within EX28DRAFT_1638 at 1655.773 kb on - strand, within EX28DRAFT_1638 at 1655.773 kb on - strand, within EX28DRAFT_1638 at 1655.804 kb on - strand, within EX28DRAFT_1638 at 1655.826 kb on + strand, within EX28DRAFT_1638 at 1655.925 kb on + strand, within EX28DRAFT_1638 at 1656.008 kb on + strand, within EX28DRAFT_1638 at 1656.060 kb on - strand, within EX28DRAFT_1638 at 1656.079 kb on + strand, within EX28DRAFT_1638 at 1656.080 kb on - strand, within EX28DRAFT_1638 at 1656.140 kb on - strand, within EX28DRAFT_1638 at 1656.161 kb on + strand, within EX28DRAFT_1638
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,653,816 - EX28DRAFT_1636 0.39 -0.4 1,653,816 - EX28DRAFT_1636 0.39 +0.6 1,653,880 - EX28DRAFT_1636 0.45 +0.5 1,653,880 - EX28DRAFT_1636 0.45 -0.1 1,653,923 - EX28DRAFT_1636 0.49 -2.1 1,654,109 + EX28DRAFT_1636 0.65 -0.2 1,654,112 + EX28DRAFT_1636 0.66 +1.0 1,654,445 + -0.4 1,654,445 + -0.5 1,654,446 - -0.2 1,654,483 - -1.1 1,654,510 - -0.2 1,654,581 + +0.4 1,654,619 - +1.2 1,654,628 + +0.2 1,654,655 - +0.4 1,654,660 + +0.1 1,654,671 + -0.8 1,654,671 + -0.3 1,654,672 - +0.2 1,654,678 + +0.6 1,654,678 + +0.0 1,654,678 + -0.7 1,654,679 - -1.7 1,654,689 - +0.1 1,654,697 + +0.5 1,654,697 + -1.0 1,654,698 - +1.2 1,654,698 - +0.0 1,654,702 + -1.1 1,654,767 + +0.2 1,654,877 + EX28DRAFT_1637 0.26 -0.6 1,654,877 + EX28DRAFT_1637 0.26 +0.8 1,654,878 - EX28DRAFT_1637 0.26 -1.2 1,654,906 - EX28DRAFT_1637 0.32 -1.4 1,654,979 - EX28DRAFT_1637 0.48 -0.3 1,655,088 + EX28DRAFT_1637 0.71 -1.1 1,655,088 + EX28DRAFT_1637 0.71 -0.1 1,655,133 + EX28DRAFT_1637 0.81 -1.6 1,655,134 - EX28DRAFT_1637 0.81 -1.3 1,655,223 + +0.1 1,655,223 + -0.2 1,655,312 + -1.2 1,655,327 - +0.5 1,655,350 + -0.7 1,655,401 + -0.2 1,655,419 - -0.4 1,655,420 + +0.6 1,655,421 - +0.1 1,655,421 - -1.5 1,655,424 + -1.2 1,655,425 - +0.2 1,655,425 - -2.1 1,655,454 + +1.1 1,655,455 - +0.9 1,655,478 - +0.1 1,655,478 - +0.3 1,655,497 + -0.4 1,655,619 + EX28DRAFT_1638 0.15 +1.1 1,655,772 + EX28DRAFT_1638 0.26 +0.1 1,655,772 + EX28DRAFT_1638 0.26 +0.1 1,655,773 - EX28DRAFT_1638 0.26 -1.2 1,655,773 - EX28DRAFT_1638 0.26 +0.7 1,655,804 - EX28DRAFT_1638 0.28 +0.6 1,655,826 + EX28DRAFT_1638 0.30 -0.6 1,655,925 + EX28DRAFT_1638 0.37 +0.8 1,656,008 + EX28DRAFT_1638 0.43 -0.3 1,656,060 - EX28DRAFT_1638 0.47 -0.4 1,656,079 + EX28DRAFT_1638 0.48 +0.3 1,656,080 - EX28DRAFT_1638 0.48 +0.0 1,656,140 - EX28DRAFT_1638 0.53 +0.0 1,656,161 + EX28DRAFT_1638 0.54 -0.5
Or see this region's nucleotide sequence