Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1607

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1606 and EX28DRAFT_1607 are separated by 73 nucleotidesEX28DRAFT_1607 and EX28DRAFT_1608 are separated by 0 nucleotides EX28DRAFT_1606: EX28DRAFT_1606 - Signal transduction histidine kinase, at 1,621,742 to 1,623,040 _1606 EX28DRAFT_1607: EX28DRAFT_1607 - DNA replication terminus site binding protein, at 1,623,114 to 1,624,043 _1607 EX28DRAFT_1608: EX28DRAFT_1608 - fumarase, class II (EC 4.2.1.2), at 1,624,044 to 1,625,438 _1608 Position (kb) 1623 1624 1625Strain fitness (log2 ratio) -1 0 1 2at 1622.120 kb on + strand, within EX28DRAFT_1606at 1622.126 kb on + strand, within EX28DRAFT_1606at 1622.127 kb on - strand, within EX28DRAFT_1606at 1622.129 kb on + strand, within EX28DRAFT_1606at 1622.129 kb on + strand, within EX28DRAFT_1606at 1622.130 kb on - strand, within EX28DRAFT_1606at 1622.374 kb on + strand, within EX28DRAFT_1606at 1622.749 kb on + strand, within EX28DRAFT_1606at 1622.750 kb on - strand, within EX28DRAFT_1606at 1622.921 kb on + strandat 1622.921 kb on + strandat 1622.995 kb on + strandat 1623.008 kb on + strandat 1623.008 kb on + strandat 1623.078 kb on + strandat 1623.078 kb on + strandat 1623.079 kb on - strandat 1623.079 kb on - strandat 1623.079 kb on - strandat 1623.079 kb on - strandat 1623.079 kb on - strandat 1623.079 kb on - strandat 1623.079 kb on - strandat 1623.080 kb on + strandat 1623.081 kb on - strandat 1623.081 kb on - strandat 1623.081 kb on - strandat 1623.113 kb on + strandat 1623.123 kb on + strandat 1623.163 kb on + strandat 1623.163 kb on + strandat 1623.163 kb on + strandat 1623.248 kb on + strand, within EX28DRAFT_1607at 1623.348 kb on - strand, within EX28DRAFT_1607at 1623.348 kb on - strand, within EX28DRAFT_1607at 1623.378 kb on - strand, within EX28DRAFT_1607at 1623.595 kb on + strand, within EX28DRAFT_1607at 1623.647 kb on + strand, within EX28DRAFT_1607at 1623.648 kb on - strand, within EX28DRAFT_1607at 1623.760 kb on - strand, within EX28DRAFT_1607at 1623.828 kb on - strand, within EX28DRAFT_1607at 1623.870 kb on + strand, within EX28DRAFT_1607at 1623.870 kb on + strand, within EX28DRAFT_1607at 1623.871 kb on - strand, within EX28DRAFT_1607at 1623.900 kb on + strand, within EX28DRAFT_1607at 1623.901 kb on - strand, within EX28DRAFT_1607at 1623.952 kb on - strandat 1623.952 kb on - strandat 1623.952 kb on - strandat 1624.001 kb on - strandat 1624.151 kb on + strandat 1624.247 kb on + strand, within EX28DRAFT_1608at 1624.789 kb on + strand, within EX28DRAFT_1608at 1624.796 kb on + strand, within EX28DRAFT_1608at 1624.796 kb on + strand, within EX28DRAFT_1608at 1624.797 kb on - strand, within EX28DRAFT_1608at 1624.808 kb on + strand, within EX28DRAFT_1608at 1624.809 kb on - strand, within EX28DRAFT_1608

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,622,120 + EX28DRAFT_1606 0.29 -1.6
1,622,126 + EX28DRAFT_1606 0.30 -0.7
1,622,127 - EX28DRAFT_1606 0.30 +0.5
1,622,129 + EX28DRAFT_1606 0.30 -0.4
1,622,129 + EX28DRAFT_1606 0.30 -1.2
1,622,130 - EX28DRAFT_1606 0.30 -1.3
1,622,374 + EX28DRAFT_1606 0.49 -0.9
1,622,749 + EX28DRAFT_1606 0.78 +1.1
1,622,750 - EX28DRAFT_1606 0.78 -0.5
1,622,921 + -0.8
1,622,921 + -0.1
1,622,995 + -0.0
1,623,008 + +0.4
1,623,008 + +0.8
1,623,078 + +1.4
1,623,078 + -1.6
1,623,079 - -1.0
1,623,079 - -1.3
1,623,079 - +0.3
1,623,079 - +0.3
1,623,079 - -1.6
1,623,079 - +0.2
1,623,079 - -1.4
1,623,080 + +0.3
1,623,081 - +0.2
1,623,081 - +0.5
1,623,081 - -0.1
1,623,113 + +0.4
1,623,123 + +0.2
1,623,163 + +0.6
1,623,163 + +0.1
1,623,163 + -0.2
1,623,248 + EX28DRAFT_1607 0.14 +1.2
1,623,348 - EX28DRAFT_1607 0.25 -0.1
1,623,348 - EX28DRAFT_1607 0.25 -0.6
1,623,378 - EX28DRAFT_1607 0.28 +0.1
1,623,595 + EX28DRAFT_1607 0.52 +0.5
1,623,647 + EX28DRAFT_1607 0.57 -0.6
1,623,648 - EX28DRAFT_1607 0.57 -0.1
1,623,760 - EX28DRAFT_1607 0.69 +0.4
1,623,828 - EX28DRAFT_1607 0.77 +0.2
1,623,870 + EX28DRAFT_1607 0.81 +0.1
1,623,870 + EX28DRAFT_1607 0.81 +0.3
1,623,871 - EX28DRAFT_1607 0.81 -0.0
1,623,900 + EX28DRAFT_1607 0.85 -0.4
1,623,901 - EX28DRAFT_1607 0.85 +0.1
1,623,952 - +1.0
1,623,952 - -1.3
1,623,952 - +0.2
1,624,001 - +0.2
1,624,151 + +1.6
1,624,247 + EX28DRAFT_1608 0.15 +2.1
1,624,789 + EX28DRAFT_1608 0.53 +1.8
1,624,796 + EX28DRAFT_1608 0.54 +2.0
1,624,796 + EX28DRAFT_1608 0.54 +1.8
1,624,797 - EX28DRAFT_1608 0.54 +1.3
1,624,808 + EX28DRAFT_1608 0.55 +2.4
1,624,809 - EX28DRAFT_1608 0.55 +1.8

Or see this region's nucleotide sequence