Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1605 and EX28DRAFT_1606 are separated by 29 nucleotides EX28DRAFT_1606 and EX28DRAFT_1607 are separated by 73 nucleotides
EX28DRAFT_1605: EX28DRAFT_1605 - Integrase, at 1,620,432 to 1,621,712
_1605
EX28DRAFT_1606: EX28DRAFT_1606 - Signal transduction histidine kinase, at 1,621,742 to 1,623,040
_1606
EX28DRAFT_1607: EX28DRAFT_1607 - DNA replication terminus site binding protein, at 1,623,114 to 1,624,043
_1607
Position (kb)
1621
1622
1623
1624 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1620.755 kb on - strand, within EX28DRAFT_1605 at 1620.760 kb on + strand, within EX28DRAFT_1605 at 1620.778 kb on + strand, within EX28DRAFT_1605 at 1620.844 kb on + strand, within EX28DRAFT_1605 at 1620.861 kb on - strand, within EX28DRAFT_1605 at 1620.864 kb on + strand, within EX28DRAFT_1605 at 1620.864 kb on + strand, within EX28DRAFT_1605 at 1620.864 kb on + strand, within EX28DRAFT_1605 at 1620.864 kb on + strand, within EX28DRAFT_1605 at 1620.865 kb on - strand, within EX28DRAFT_1605 at 1620.888 kb on - strand, within EX28DRAFT_1605 at 1620.913 kb on + strand, within EX28DRAFT_1605 at 1620.913 kb on + strand, within EX28DRAFT_1605 at 1620.914 kb on - strand, within EX28DRAFT_1605 at 1620.919 kb on - strand, within EX28DRAFT_1605 at 1620.922 kb on - strand, within EX28DRAFT_1605 at 1620.988 kb on - strand, within EX28DRAFT_1605 at 1621.111 kb on - strand, within EX28DRAFT_1605 at 1621.259 kb on - strand, within EX28DRAFT_1605 at 1621.302 kb on - strand, within EX28DRAFT_1605 at 1621.336 kb on - strand, within EX28DRAFT_1605 at 1621.386 kb on - strand, within EX28DRAFT_1605 at 1621.422 kb on + strand, within EX28DRAFT_1605 at 1621.447 kb on + strand, within EX28DRAFT_1605 at 1621.454 kb on + strand, within EX28DRAFT_1605 at 1621.455 kb on - strand, within EX28DRAFT_1605 at 1621.457 kb on + strand, within EX28DRAFT_1605 at 1621.508 kb on + strand, within EX28DRAFT_1605 at 1621.509 kb on - strand, within EX28DRAFT_1605 at 1621.509 kb on - strand, within EX28DRAFT_1605 at 1621.509 kb on - strand, within EX28DRAFT_1605 at 1621.509 kb on - strand, within EX28DRAFT_1605 at 1621.509 kb on - strand, within EX28DRAFT_1605 at 1621.509 kb on - strand, within EX28DRAFT_1605 at 1621.512 kb on + strand, within EX28DRAFT_1605 at 1621.512 kb on + strand, within EX28DRAFT_1605 at 1621.512 kb on + strand, within EX28DRAFT_1605 at 1621.512 kb on + strand, within EX28DRAFT_1605 at 1621.513 kb on - strand, within EX28DRAFT_1605 at 1621.513 kb on - strand, within EX28DRAFT_1605 at 1621.513 kb on - strand, within EX28DRAFT_1605 at 1621.600 kb on + strand at 1621.600 kb on + strand at 1621.600 kb on + strand at 1621.601 kb on - strand at 1621.615 kb on + strand at 1621.615 kb on + strand at 1621.670 kb on + strand at 1621.670 kb on + strand at 1621.671 kb on - strand at 1621.685 kb on - strand at 1621.820 kb on + strand at 1621.883 kb on + strand, within EX28DRAFT_1606 at 1621.884 kb on - strand, within EX28DRAFT_1606 at 1621.972 kb on - strand, within EX28DRAFT_1606 at 1622.060 kb on + strand, within EX28DRAFT_1606 at 1622.060 kb on + strand, within EX28DRAFT_1606 at 1622.061 kb on - strand, within EX28DRAFT_1606 at 1622.094 kb on - strand, within EX28DRAFT_1606 at 1622.120 kb on + strand, within EX28DRAFT_1606 at 1622.126 kb on + strand, within EX28DRAFT_1606 at 1622.127 kb on - strand, within EX28DRAFT_1606 at 1622.129 kb on + strand, within EX28DRAFT_1606 at 1622.129 kb on + strand, within EX28DRAFT_1606 at 1622.130 kb on - strand, within EX28DRAFT_1606 at 1622.374 kb on + strand, within EX28DRAFT_1606 at 1622.749 kb on + strand, within EX28DRAFT_1606 at 1622.750 kb on - strand, within EX28DRAFT_1606 at 1622.921 kb on + strand at 1622.921 kb on + strand at 1622.995 kb on + strand at 1623.008 kb on + strand at 1623.008 kb on + strand at 1623.078 kb on + strand at 1623.078 kb on + strand at 1623.079 kb on - strand at 1623.079 kb on - strand at 1623.079 kb on - strand at 1623.079 kb on - strand at 1623.079 kb on - strand at 1623.079 kb on - strand at 1623.079 kb on - strand at 1623.080 kb on + strand at 1623.081 kb on - strand at 1623.081 kb on - strand at 1623.081 kb on - strand at 1623.113 kb on + strand at 1623.123 kb on + strand at 1623.163 kb on + strand at 1623.163 kb on + strand at 1623.163 kb on + strand at 1623.248 kb on + strand, within EX28DRAFT_1607 at 1623.348 kb on - strand, within EX28DRAFT_1607 at 1623.348 kb on - strand, within EX28DRAFT_1607 at 1623.378 kb on - strand, within EX28DRAFT_1607 at 1623.595 kb on + strand, within EX28DRAFT_1607 at 1623.647 kb on + strand, within EX28DRAFT_1607 at 1623.648 kb on - strand, within EX28DRAFT_1607 at 1623.760 kb on - strand, within EX28DRAFT_1607 at 1623.828 kb on - strand, within EX28DRAFT_1607 at 1623.870 kb on + strand, within EX28DRAFT_1607 at 1623.870 kb on + strand, within EX28DRAFT_1607 at 1623.871 kb on - strand, within EX28DRAFT_1607 at 1623.900 kb on + strand, within EX28DRAFT_1607 at 1623.901 kb on - strand, within EX28DRAFT_1607 at 1623.952 kb on - strand at 1623.952 kb on - strand at 1623.952 kb on - strand at 1624.001 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,620,755 - EX28DRAFT_1605 0.25 +0.1 1,620,760 + EX28DRAFT_1605 0.26 +0.3 1,620,778 + EX28DRAFT_1605 0.27 -0.5 1,620,844 + EX28DRAFT_1605 0.32 +0.1 1,620,861 - EX28DRAFT_1605 0.33 -0.1 1,620,864 + EX28DRAFT_1605 0.34 +0.6 1,620,864 + EX28DRAFT_1605 0.34 -0.1 1,620,864 + EX28DRAFT_1605 0.34 -0.6 1,620,864 + EX28DRAFT_1605 0.34 -1.0 1,620,865 - EX28DRAFT_1605 0.34 -0.9 1,620,888 - EX28DRAFT_1605 0.36 +0.1 1,620,913 + EX28DRAFT_1605 0.38 -0.2 1,620,913 + EX28DRAFT_1605 0.38 -2.0 1,620,914 - EX28DRAFT_1605 0.38 +0.6 1,620,919 - EX28DRAFT_1605 0.38 -2.7 1,620,922 - EX28DRAFT_1605 0.38 -0.9 1,620,988 - EX28DRAFT_1605 0.43 -0.4 1,621,111 - EX28DRAFT_1605 0.53 -4.5 1,621,259 - EX28DRAFT_1605 0.65 +0.0 1,621,302 - EX28DRAFT_1605 0.68 +0.6 1,621,336 - EX28DRAFT_1605 0.71 +0.3 1,621,386 - EX28DRAFT_1605 0.74 +0.2 1,621,422 + EX28DRAFT_1605 0.77 +0.4 1,621,447 + EX28DRAFT_1605 0.79 +0.5 1,621,454 + EX28DRAFT_1605 0.80 +0.9 1,621,455 - EX28DRAFT_1605 0.80 +0.1 1,621,457 + EX28DRAFT_1605 0.80 +0.1 1,621,508 + EX28DRAFT_1605 0.84 -0.1 1,621,509 - EX28DRAFT_1605 0.84 +0.1 1,621,509 - EX28DRAFT_1605 0.84 +0.5 1,621,509 - EX28DRAFT_1605 0.84 -0.4 1,621,509 - EX28DRAFT_1605 0.84 +0.6 1,621,509 - EX28DRAFT_1605 0.84 +0.6 1,621,509 - EX28DRAFT_1605 0.84 +0.0 1,621,512 + EX28DRAFT_1605 0.84 +1.1 1,621,512 + EX28DRAFT_1605 0.84 +0.9 1,621,512 + EX28DRAFT_1605 0.84 +0.5 1,621,512 + EX28DRAFT_1605 0.84 +0.4 1,621,513 - EX28DRAFT_1605 0.84 +1.5 1,621,513 - EX28DRAFT_1605 0.84 -0.2 1,621,513 - EX28DRAFT_1605 0.84 +0.2 1,621,600 + -0.3 1,621,600 + +0.9 1,621,600 + -1.1 1,621,601 - -0.4 1,621,615 + +0.3 1,621,615 + +0.5 1,621,670 + +0.2 1,621,670 + +0.7 1,621,671 - -0.2 1,621,685 - -0.3 1,621,820 + -3.1 1,621,883 + EX28DRAFT_1606 0.11 -0.4 1,621,884 - EX28DRAFT_1606 0.11 -0.6 1,621,972 - EX28DRAFT_1606 0.18 -0.4 1,622,060 + EX28DRAFT_1606 0.24 -2.5 1,622,060 + EX28DRAFT_1606 0.24 -0.8 1,622,061 - EX28DRAFT_1606 0.25 -0.7 1,622,094 - EX28DRAFT_1606 0.27 -0.5 1,622,120 + EX28DRAFT_1606 0.29 -1.6 1,622,126 + EX28DRAFT_1606 0.30 -0.7 1,622,127 - EX28DRAFT_1606 0.30 +0.5 1,622,129 + EX28DRAFT_1606 0.30 -0.4 1,622,129 + EX28DRAFT_1606 0.30 -1.2 1,622,130 - EX28DRAFT_1606 0.30 -1.3 1,622,374 + EX28DRAFT_1606 0.49 -0.9 1,622,749 + EX28DRAFT_1606 0.78 +1.1 1,622,750 - EX28DRAFT_1606 0.78 -0.5 1,622,921 + -0.8 1,622,921 + -0.1 1,622,995 + -0.0 1,623,008 + +0.4 1,623,008 + +0.8 1,623,078 + +1.4 1,623,078 + -1.6 1,623,079 - -1.0 1,623,079 - -1.3 1,623,079 - +0.3 1,623,079 - +0.3 1,623,079 - -1.6 1,623,079 - +0.2 1,623,079 - -1.4 1,623,080 + +0.3 1,623,081 - +0.2 1,623,081 - +0.5 1,623,081 - -0.1 1,623,113 + +0.4 1,623,123 + +0.2 1,623,163 + +0.6 1,623,163 + +0.1 1,623,163 + -0.2 1,623,248 + EX28DRAFT_1607 0.14 +1.2 1,623,348 - EX28DRAFT_1607 0.25 -0.1 1,623,348 - EX28DRAFT_1607 0.25 -0.6 1,623,378 - EX28DRAFT_1607 0.28 +0.1 1,623,595 + EX28DRAFT_1607 0.52 +0.5 1,623,647 + EX28DRAFT_1607 0.57 -0.6 1,623,648 - EX28DRAFT_1607 0.57 -0.1 1,623,760 - EX28DRAFT_1607 0.69 +0.4 1,623,828 - EX28DRAFT_1607 0.77 +0.2 1,623,870 + EX28DRAFT_1607 0.81 +0.1 1,623,870 + EX28DRAFT_1607 0.81 +0.3 1,623,871 - EX28DRAFT_1607 0.81 -0.0 1,623,900 + EX28DRAFT_1607 0.85 -0.4 1,623,901 - EX28DRAFT_1607 0.85 +0.1 1,623,952 - +1.0 1,623,952 - -1.3 1,623,952 - +0.2 1,624,001 - +0.2
Or see this region's nucleotide sequence