Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1602 and EX28DRAFT_1603 are separated by 38 nucleotides EX28DRAFT_1603 and EX28DRAFT_1604 are separated by 64 nucleotides EX28DRAFT_1604 and EX28DRAFT_1605 overlap by 1 nucleotides
EX28DRAFT_1602: EX28DRAFT_1602 - RecT family, at 1,618,786 to 1,619,871
_1602
EX28DRAFT_1603: EX28DRAFT_1603 - Protein of unknown function (DUF4060), at 1,619,910 to 1,620,152
_1603
EX28DRAFT_1604: EX28DRAFT_1604 - Putative excisionase (DUF1233), at 1,620,217 to 1,620,432
_1604
EX28DRAFT_1605: EX28DRAFT_1605 - Integrase, at 1,620,432 to 1,621,712
_1605
Position (kb)
1620
1621 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1619.235 kb on + strand, within EX28DRAFT_1602 at 1619.336 kb on - strand, within EX28DRAFT_1602 at 1619.336 kb on - strand, within EX28DRAFT_1602 at 1619.472 kb on + strand, within EX28DRAFT_1602 at 1619.590 kb on - strand, within EX28DRAFT_1602 at 1619.878 kb on - strand at 1619.933 kb on + strand at 1619.995 kb on - strand, within EX28DRAFT_1603 at 1620.031 kb on - strand, within EX28DRAFT_1603 at 1620.031 kb on - strand, within EX28DRAFT_1603 at 1620.033 kb on - strand, within EX28DRAFT_1603 at 1620.090 kb on + strand, within EX28DRAFT_1603 at 1620.090 kb on + strand, within EX28DRAFT_1603 at 1620.091 kb on - strand, within EX28DRAFT_1603 at 1620.162 kb on - strand at 1620.171 kb on + strand at 1620.183 kb on + strand at 1620.183 kb on + strand at 1620.184 kb on - strand at 1620.187 kb on + strand at 1620.187 kb on + strand at 1620.187 kb on + strand at 1620.187 kb on + strand at 1620.187 kb on + strand at 1620.187 kb on + strand at 1620.187 kb on + strand at 1620.188 kb on - strand at 1620.188 kb on - strand at 1620.188 kb on - strand at 1620.188 kb on - strand at 1620.188 kb on - strand at 1620.188 kb on - strand at 1620.189 kb on + strand at 1620.232 kb on + strand at 1620.298 kb on - strand, within EX28DRAFT_1604 at 1620.339 kb on + strand, within EX28DRAFT_1604 at 1620.391 kb on + strand, within EX28DRAFT_1604 at 1620.392 kb on - strand, within EX28DRAFT_1604 at 1620.392 kb on - strand, within EX28DRAFT_1604 at 1620.408 kb on + strand, within EX28DRAFT_1604 at 1620.409 kb on - strand, within EX28DRAFT_1604 at 1620.470 kb on + strand at 1620.470 kb on + strand at 1620.482 kb on - strand at 1620.503 kb on + strand at 1620.503 kb on + strand at 1620.535 kb on + strand at 1620.535 kb on + strand at 1620.655 kb on - strand, within EX28DRAFT_1605 at 1620.656 kb on + strand, within EX28DRAFT_1605 at 1620.656 kb on + strand, within EX28DRAFT_1605 at 1620.656 kb on + strand, within EX28DRAFT_1605 at 1620.657 kb on - strand, within EX28DRAFT_1605 at 1620.672 kb on - strand, within EX28DRAFT_1605 at 1620.755 kb on - strand, within EX28DRAFT_1605 at 1620.760 kb on + strand, within EX28DRAFT_1605 at 1620.778 kb on + strand, within EX28DRAFT_1605 at 1620.844 kb on + strand, within EX28DRAFT_1605 at 1620.861 kb on - strand, within EX28DRAFT_1605 at 1620.864 kb on + strand, within EX28DRAFT_1605 at 1620.864 kb on + strand, within EX28DRAFT_1605 at 1620.864 kb on + strand, within EX28DRAFT_1605 at 1620.864 kb on + strand, within EX28DRAFT_1605 at 1620.865 kb on - strand, within EX28DRAFT_1605 at 1620.888 kb on - strand, within EX28DRAFT_1605 at 1620.913 kb on + strand, within EX28DRAFT_1605 at 1620.913 kb on + strand, within EX28DRAFT_1605 at 1620.914 kb on - strand, within EX28DRAFT_1605 at 1620.919 kb on - strand, within EX28DRAFT_1605 at 1620.922 kb on - strand, within EX28DRAFT_1605 at 1620.988 kb on - strand, within EX28DRAFT_1605 at 1621.111 kb on - strand, within EX28DRAFT_1605 at 1621.259 kb on - strand, within EX28DRAFT_1605 at 1621.302 kb on - strand, within EX28DRAFT_1605 at 1621.336 kb on - strand, within EX28DRAFT_1605 at 1621.386 kb on - strand, within EX28DRAFT_1605 at 1621.422 kb on + strand, within EX28DRAFT_1605
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,619,235 + EX28DRAFT_1602 0.41 +0.3 1,619,336 - EX28DRAFT_1602 0.51 +1.9 1,619,336 - EX28DRAFT_1602 0.51 +0.2 1,619,472 + EX28DRAFT_1602 0.63 -0.4 1,619,590 - EX28DRAFT_1602 0.74 +0.4 1,619,878 - +0.3 1,619,933 + -1.2 1,619,995 - EX28DRAFT_1603 0.35 -0.9 1,620,031 - EX28DRAFT_1603 0.50 +0.6 1,620,031 - EX28DRAFT_1603 0.50 -2.1 1,620,033 - EX28DRAFT_1603 0.51 +0.1 1,620,090 + EX28DRAFT_1603 0.74 -0.2 1,620,090 + EX28DRAFT_1603 0.74 -1.5 1,620,091 - EX28DRAFT_1603 0.74 -0.2 1,620,162 - +1.0 1,620,171 + -0.4 1,620,183 + +1.1 1,620,183 + -1.2 1,620,184 - -0.2 1,620,187 + -0.0 1,620,187 + +0.8 1,620,187 + -1.1 1,620,187 + +0.7 1,620,187 + +0.1 1,620,187 + +1.3 1,620,187 + -0.6 1,620,188 - -0.5 1,620,188 - -0.3 1,620,188 - -0.0 1,620,188 - +0.2 1,620,188 - -0.6 1,620,188 - +0.0 1,620,189 + +0.7 1,620,232 + -1.1 1,620,298 - EX28DRAFT_1604 0.38 -0.6 1,620,339 + EX28DRAFT_1604 0.56 +0.7 1,620,391 + EX28DRAFT_1604 0.81 +0.2 1,620,392 - EX28DRAFT_1604 0.81 +1.1 1,620,392 - EX28DRAFT_1604 0.81 +0.1 1,620,408 + EX28DRAFT_1604 0.88 -0.5 1,620,409 - EX28DRAFT_1604 0.89 +0.1 1,620,470 + +0.4 1,620,470 + -1.0 1,620,482 - -0.8 1,620,503 + -0.5 1,620,503 + -0.1 1,620,535 + +0.3 1,620,535 + +0.2 1,620,655 - EX28DRAFT_1605 0.17 +0.6 1,620,656 + EX28DRAFT_1605 0.17 -1.4 1,620,656 + EX28DRAFT_1605 0.17 -0.6 1,620,656 + EX28DRAFT_1605 0.17 -0.3 1,620,657 - EX28DRAFT_1605 0.18 +1.0 1,620,672 - EX28DRAFT_1605 0.19 -0.2 1,620,755 - EX28DRAFT_1605 0.25 +0.1 1,620,760 + EX28DRAFT_1605 0.26 +0.3 1,620,778 + EX28DRAFT_1605 0.27 -0.5 1,620,844 + EX28DRAFT_1605 0.32 +0.1 1,620,861 - EX28DRAFT_1605 0.33 -0.1 1,620,864 + EX28DRAFT_1605 0.34 +0.6 1,620,864 + EX28DRAFT_1605 0.34 -0.1 1,620,864 + EX28DRAFT_1605 0.34 -0.6 1,620,864 + EX28DRAFT_1605 0.34 -1.0 1,620,865 - EX28DRAFT_1605 0.34 -0.9 1,620,888 - EX28DRAFT_1605 0.36 +0.1 1,620,913 + EX28DRAFT_1605 0.38 -0.2 1,620,913 + EX28DRAFT_1605 0.38 -2.0 1,620,914 - EX28DRAFT_1605 0.38 +0.6 1,620,919 - EX28DRAFT_1605 0.38 -2.7 1,620,922 - EX28DRAFT_1605 0.38 -0.9 1,620,988 - EX28DRAFT_1605 0.43 -0.4 1,621,111 - EX28DRAFT_1605 0.53 -4.5 1,621,259 - EX28DRAFT_1605 0.65 +0.0 1,621,302 - EX28DRAFT_1605 0.68 +0.6 1,621,336 - EX28DRAFT_1605 0.71 +0.3 1,621,386 - EX28DRAFT_1605 0.74 +0.2 1,621,422 + EX28DRAFT_1605 0.77 +0.4
Or see this region's nucleotide sequence