Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1595 and EX28DRAFT_1596 overlap by 4 nucleotides EX28DRAFT_1596 and EX28DRAFT_1597 are separated by 319 nucleotides EX28DRAFT_1597 and EX28DRAFT_1598 are separated by 174 nucleotides
EX28DRAFT_1594: EX28DRAFT_1594 - phage replication protein P, at 1,610,302 to 1,610,988
_1594
EX28DRAFT_1595: EX28DRAFT_1595 - phage replication protein O, at 1,610,985 to 1,611,990
_1595
EX28DRAFT_1596: EX28DRAFT_1596 - Protein of unknown function (DUF1019), at 1,611,987 to 1,612,538
_1596
EX28DRAFT_1597: EX28DRAFT_1597 - Helix-turn-helix, at 1,612,858 to 1,613,241
_1597
EX28DRAFT_1598: EX28DRAFT_1598 - P63C domain, at 1,613,416 to 1,614,402
_1598
Position (kb)
1611
1612
1613 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1611.018 kb on - strand at 1611.219 kb on - strand, within EX28DRAFT_1595 at 1611.219 kb on - strand, within EX28DRAFT_1595 at 1611.280 kb on + strand, within EX28DRAFT_1595 at 1611.327 kb on - strand, within EX28DRAFT_1595 at 1611.340 kb on + strand, within EX28DRAFT_1595 at 1611.340 kb on + strand, within EX28DRAFT_1595 at 1611.340 kb on + strand, within EX28DRAFT_1595 at 1611.341 kb on - strand, within EX28DRAFT_1595 at 1611.341 kb on - strand, within EX28DRAFT_1595 at 1611.342 kb on + strand, within EX28DRAFT_1595 at 1611.434 kb on + strand, within EX28DRAFT_1595 at 1611.435 kb on - strand, within EX28DRAFT_1595 at 1611.446 kb on + strand, within EX28DRAFT_1595 at 1611.447 kb on - strand, within EX28DRAFT_1595 at 1611.447 kb on - strand, within EX28DRAFT_1595 at 1611.447 kb on - strand, within EX28DRAFT_1595 at 1611.448 kb on + strand, within EX28DRAFT_1595 at 1611.448 kb on + strand, within EX28DRAFT_1595 at 1611.570 kb on + strand, within EX28DRAFT_1595 at 1611.571 kb on - strand, within EX28DRAFT_1595 at 1611.671 kb on + strand, within EX28DRAFT_1595 at 1611.672 kb on - strand, within EX28DRAFT_1595 at 1611.729 kb on - strand, within EX28DRAFT_1595 at 1611.818 kb on + strand, within EX28DRAFT_1595 at 1611.819 kb on - strand, within EX28DRAFT_1595 at 1611.819 kb on - strand, within EX28DRAFT_1595 at 1611.819 kb on - strand, within EX28DRAFT_1595 at 1611.842 kb on + strand, within EX28DRAFT_1595 at 1611.902 kb on + strand at 1611.903 kb on - strand at 1611.906 kb on + strand at 1611.906 kb on + strand at 1611.906 kb on + strand at 1611.906 kb on + strand at 1611.906 kb on + strand at 1611.907 kb on - strand at 1611.907 kb on - strand at 1611.979 kb on + strand at 1611.990 kb on + strand at 1611.990 kb on + strand at 1612.034 kb on + strand at 1612.215 kb on + strand, within EX28DRAFT_1596 at 1612.496 kb on + strand at 1612.511 kb on + strand at 1612.511 kb on + strand at 1612.538 kb on + strand at 1612.538 kb on + strand at 1612.542 kb on + strand at 1612.542 kb on + strand at 1612.759 kb on + strand at 1612.759 kb on + strand at 1612.759 kb on + strand at 1612.846 kb on + strand at 1612.846 kb on + strand at 1612.857 kb on + strand at 1613.382 kb on - strand at 1613.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,611,018 - +0.9 1,611,219 - EX28DRAFT_1595 0.23 +1.3 1,611,219 - EX28DRAFT_1595 0.23 -0.1 1,611,280 + EX28DRAFT_1595 0.29 -1.0 1,611,327 - EX28DRAFT_1595 0.34 -1.4 1,611,340 + EX28DRAFT_1595 0.35 -0.1 1,611,340 + EX28DRAFT_1595 0.35 -1.0 1,611,340 + EX28DRAFT_1595 0.35 -0.1 1,611,341 - EX28DRAFT_1595 0.35 +0.5 1,611,341 - EX28DRAFT_1595 0.35 -0.3 1,611,342 + EX28DRAFT_1595 0.35 -1.7 1,611,434 + EX28DRAFT_1595 0.45 +1.0 1,611,435 - EX28DRAFT_1595 0.45 -0.3 1,611,446 + EX28DRAFT_1595 0.46 -0.5 1,611,447 - EX28DRAFT_1595 0.46 -0.2 1,611,447 - EX28DRAFT_1595 0.46 +0.1 1,611,447 - EX28DRAFT_1595 0.46 +0.3 1,611,448 + EX28DRAFT_1595 0.46 -0.2 1,611,448 + EX28DRAFT_1595 0.46 +0.3 1,611,570 + EX28DRAFT_1595 0.58 -0.7 1,611,571 - EX28DRAFT_1595 0.58 -0.4 1,611,671 + EX28DRAFT_1595 0.68 +0.4 1,611,672 - EX28DRAFT_1595 0.68 +0.1 1,611,729 - EX28DRAFT_1595 0.74 -0.9 1,611,818 + EX28DRAFT_1595 0.83 +0.2 1,611,819 - EX28DRAFT_1595 0.83 -2.0 1,611,819 - EX28DRAFT_1595 0.83 +0.2 1,611,819 - EX28DRAFT_1595 0.83 -2.2 1,611,842 + EX28DRAFT_1595 0.85 +0.6 1,611,902 + -1.2 1,611,903 - +0.1 1,611,906 + -2.4 1,611,906 + -0.5 1,611,906 + -0.5 1,611,906 + -0.3 1,611,906 + +1.1 1,611,907 - -0.9 1,611,907 - +1.9 1,611,979 + -2.0 1,611,990 + +0.0 1,611,990 + -0.0 1,612,034 + -0.5 1,612,215 + EX28DRAFT_1596 0.41 -1.8 1,612,496 + -0.0 1,612,511 + +0.1 1,612,511 + +0.1 1,612,538 + +0.8 1,612,538 + -0.4 1,612,542 + +0.4 1,612,542 + +0.2 1,612,759 + +0.1 1,612,759 + -1.2 1,612,759 + -0.7 1,612,846 + +0.5 1,612,846 + -0.7 1,612,857 + +0.8 1,613,382 - -0.5 1,613,393 - -0.7
Or see this region's nucleotide sequence