Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1582 and EX28DRAFT_1583 overlap by 4 nucleotides EX28DRAFT_1583 and EX28DRAFT_1584 overlap by 4 nucleotides EX28DRAFT_1584 and EX28DRAFT_1585 overlap by 35 nucleotides EX28DRAFT_1585 and EX28DRAFT_1586 are separated by 39 nucleotides
EX28DRAFT_1582: EX28DRAFT_1582 - Antitermination protein, at 1,595,756 to 1,596,589
_1582
EX28DRAFT_1583: EX28DRAFT_1583 - Holliday junction resolvase, at 1,596,586 to 1,596,954
_1583
EX28DRAFT_1584: EX28DRAFT_1584 - hypothetical protein, at 1,596,951 to 1,597,190
_1584
EX28DRAFT_1585: EX28DRAFT_1585 - Protein of unknown function (DUF1367), at 1,597,156 to 1,597,758
_1585
EX28DRAFT_1586: EX28DRAFT_1586 - hypothetical protein, at 1,597,798 to 1,598,040
_1586
Position (kb)
1596
1597 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1595.593 kb on - strand at 1595.612 kb on - strand at 1595.829 kb on + strand at 1595.829 kb on + strand at 1595.829 kb on + strand at 1595.858 kb on - strand, within EX28DRAFT_1582 at 1595.888 kb on + strand, within EX28DRAFT_1582 at 1595.888 kb on + strand, within EX28DRAFT_1582 at 1595.888 kb on + strand, within EX28DRAFT_1582 at 1595.888 kb on + strand, within EX28DRAFT_1582 at 1595.984 kb on - strand, within EX28DRAFT_1582 at 1596.038 kb on + strand, within EX28DRAFT_1582 at 1596.038 kb on + strand, within EX28DRAFT_1582 at 1596.039 kb on - strand, within EX28DRAFT_1582 at 1596.041 kb on + strand, within EX28DRAFT_1582 at 1596.042 kb on - strand, within EX28DRAFT_1582 at 1596.042 kb on - strand, within EX28DRAFT_1582 at 1596.098 kb on - strand, within EX28DRAFT_1582 at 1596.098 kb on - strand, within EX28DRAFT_1582 at 1596.098 kb on - strand, within EX28DRAFT_1582 at 1596.109 kb on - strand, within EX28DRAFT_1582 at 1596.317 kb on - strand, within EX28DRAFT_1582 at 1596.373 kb on - strand, within EX28DRAFT_1582 at 1596.444 kb on + strand, within EX28DRAFT_1582 at 1596.445 kb on - strand, within EX28DRAFT_1582 at 1596.504 kb on - strand, within EX28DRAFT_1582 at 1596.668 kb on - strand, within EX28DRAFT_1583 at 1596.790 kb on + strand, within EX28DRAFT_1583 at 1596.790 kb on + strand, within EX28DRAFT_1583 at 1596.790 kb on + strand, within EX28DRAFT_1583 at 1596.867 kb on + strand, within EX28DRAFT_1583 at 1596.998 kb on + strand, within EX28DRAFT_1584 at 1596.999 kb on - strand, within EX28DRAFT_1584 at 1597.085 kb on - strand, within EX28DRAFT_1584 at 1597.262 kb on + strand, within EX28DRAFT_1585 at 1597.262 kb on + strand, within EX28DRAFT_1585 at 1597.263 kb on - strand, within EX28DRAFT_1585 at 1597.388 kb on + strand, within EX28DRAFT_1585 at 1597.413 kb on + strand, within EX28DRAFT_1585 at 1597.450 kb on + strand, within EX28DRAFT_1585 at 1597.455 kb on - strand, within EX28DRAFT_1585 at 1597.455 kb on - strand, within EX28DRAFT_1585 at 1597.497 kb on - strand, within EX28DRAFT_1585 at 1597.552 kb on - strand, within EX28DRAFT_1585 at 1597.717 kb on + strand at 1597.737 kb on + strand at 1597.737 kb on + strand at 1597.744 kb on + strand at 1597.783 kb on - strand at 1597.783 kb on - strand at 1597.784 kb on + strand at 1597.785 kb on - strand at 1597.810 kb on - strand at 1597.813 kb on - strand at 1597.813 kb on - strand at 1597.813 kb on - strand at 1597.827 kb on + strand, within EX28DRAFT_1586 at 1597.915 kb on + strand, within EX28DRAFT_1586 at 1597.915 kb on + strand, within EX28DRAFT_1586
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,595,593 - -0.5 1,595,612 - -1.5 1,595,829 + +0.6 1,595,829 + +0.4 1,595,829 + -1.0 1,595,858 - EX28DRAFT_1582 0.12 -2.0 1,595,888 + EX28DRAFT_1582 0.16 -0.1 1,595,888 + EX28DRAFT_1582 0.16 +0.2 1,595,888 + EX28DRAFT_1582 0.16 +0.3 1,595,888 + EX28DRAFT_1582 0.16 -0.5 1,595,984 - EX28DRAFT_1582 0.27 +0.1 1,596,038 + EX28DRAFT_1582 0.34 +0.1 1,596,038 + EX28DRAFT_1582 0.34 +0.2 1,596,039 - EX28DRAFT_1582 0.34 +1.4 1,596,041 + EX28DRAFT_1582 0.34 -2.6 1,596,042 - EX28DRAFT_1582 0.34 -0.0 1,596,042 - EX28DRAFT_1582 0.34 -0.7 1,596,098 - EX28DRAFT_1582 0.41 +0.1 1,596,098 - EX28DRAFT_1582 0.41 -0.8 1,596,098 - EX28DRAFT_1582 0.41 -0.8 1,596,109 - EX28DRAFT_1582 0.42 +1.3 1,596,317 - EX28DRAFT_1582 0.67 -1.4 1,596,373 - EX28DRAFT_1582 0.74 +0.7 1,596,444 + EX28DRAFT_1582 0.82 +0.5 1,596,445 - EX28DRAFT_1582 0.83 -2.5 1,596,504 - EX28DRAFT_1582 0.90 -0.2 1,596,668 - EX28DRAFT_1583 0.22 +0.4 1,596,790 + EX28DRAFT_1583 0.55 -0.1 1,596,790 + EX28DRAFT_1583 0.55 +0.1 1,596,790 + EX28DRAFT_1583 0.55 +0.7 1,596,867 + EX28DRAFT_1583 0.76 +0.5 1,596,998 + EX28DRAFT_1584 0.20 -1.7 1,596,999 - EX28DRAFT_1584 0.20 +0.8 1,597,085 - EX28DRAFT_1584 0.56 -1.2 1,597,262 + EX28DRAFT_1585 0.18 -0.7 1,597,262 + EX28DRAFT_1585 0.18 -0.7 1,597,263 - EX28DRAFT_1585 0.18 +0.6 1,597,388 + EX28DRAFT_1585 0.38 +0.1 1,597,413 + EX28DRAFT_1585 0.43 -0.2 1,597,450 + EX28DRAFT_1585 0.49 +0.1 1,597,455 - EX28DRAFT_1585 0.50 -0.2 1,597,455 - EX28DRAFT_1585 0.50 -0.4 1,597,497 - EX28DRAFT_1585 0.57 -0.5 1,597,552 - EX28DRAFT_1585 0.66 -1.8 1,597,717 + +0.7 1,597,737 + +0.4 1,597,737 + +0.1 1,597,744 + +0.1 1,597,783 - -0.2 1,597,783 - -0.7 1,597,784 + -2.4 1,597,785 - +0.9 1,597,810 - +0.1 1,597,813 - -2.0 1,597,813 - +0.1 1,597,813 - -3.6 1,597,827 + EX28DRAFT_1586 0.12 +0.1 1,597,915 + EX28DRAFT_1586 0.48 +0.4 1,597,915 + EX28DRAFT_1586 0.48 -2.2
Or see this region's nucleotide sequence