Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1516 and EX28DRAFT_1517 are separated by 124 nucleotides EX28DRAFT_1517 and EX28DRAFT_1518 overlap by 4 nucleotides EX28DRAFT_1518 and EX28DRAFT_1519 are separated by 78 nucleotides
EX28DRAFT_1516: EX28DRAFT_1516 - Outer membrane protein V, at 1,529,561 to 1,530,346
_1516
EX28DRAFT_1517: EX28DRAFT_1517 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,530,471 to 1,531,166
_1517
EX28DRAFT_1518: EX28DRAFT_1518 - Signal transduction histidine kinase, at 1,531,163 to 1,532,359
_1518
EX28DRAFT_1519: EX28DRAFT_1519 - RND family efflux transporter, MFP subunit, at 1,532,438 to 1,533,586
_1519
Position (kb)
1531
1532
1533 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1530.320 kb on - strand at 1530.320 kb on - strand at 1530.320 kb on - strand at 1530.321 kb on + strand at 1530.321 kb on + strand at 1530.321 kb on + strand at 1530.321 kb on + strand at 1530.321 kb on + strand at 1530.322 kb on - strand at 1530.322 kb on - strand at 1530.322 kb on - strand at 1530.322 kb on - strand at 1530.322 kb on - strand at 1530.322 kb on - strand at 1530.322 kb on - strand at 1530.322 kb on - strand at 1530.346 kb on + strand at 1530.346 kb on + strand at 1530.346 kb on + strand at 1530.347 kb on - strand at 1530.347 kb on - strand at 1530.411 kb on - strand at 1530.535 kb on - strand at 1530.622 kb on + strand, within EX28DRAFT_1517 at 1530.622 kb on + strand, within EX28DRAFT_1517 at 1530.684 kb on - strand, within EX28DRAFT_1517 at 1530.684 kb on - strand, within EX28DRAFT_1517 at 1530.768 kb on + strand, within EX28DRAFT_1517 at 1530.768 kb on + strand, within EX28DRAFT_1517 at 1530.768 kb on + strand, within EX28DRAFT_1517 at 1530.769 kb on - strand, within EX28DRAFT_1517 at 1530.947 kb on + strand, within EX28DRAFT_1517 at 1531.015 kb on - strand, within EX28DRAFT_1517 at 1531.018 kb on + strand, within EX28DRAFT_1517 at 1531.018 kb on + strand, within EX28DRAFT_1517 at 1531.077 kb on + strand, within EX28DRAFT_1517 at 1531.078 kb on - strand, within EX28DRAFT_1517 at 1531.079 kb on + strand, within EX28DRAFT_1517 at 1531.169 kb on - strand at 1531.630 kb on + strand, within EX28DRAFT_1518 at 1531.631 kb on - strand, within EX28DRAFT_1518 at 1531.631 kb on - strand, within EX28DRAFT_1518 at 1531.750 kb on - strand, within EX28DRAFT_1518 at 1532.090 kb on + strand, within EX28DRAFT_1518 at 1532.317 kb on - strand at 1532.317 kb on - strand at 1532.406 kb on + strand at 1532.425 kb on - strand at 1532.437 kb on + strand at 1532.482 kb on + strand at 1532.482 kb on + strand at 1532.483 kb on - strand at 1532.483 kb on - strand at 1532.486 kb on + strand at 1532.486 kb on + strand at 1532.487 kb on - strand at 1532.487 kb on - strand at 1532.615 kb on + strand, within EX28DRAFT_1519 at 1532.616 kb on - strand, within EX28DRAFT_1519
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,530,320 - -0.0 1,530,320 - -0.1 1,530,320 - +0.2 1,530,321 + +0.1 1,530,321 + -0.7 1,530,321 + -0.4 1,530,321 + -1.0 1,530,321 + +0.2 1,530,322 - +1.0 1,530,322 - -0.3 1,530,322 - +1.4 1,530,322 - -1.2 1,530,322 - +0.6 1,530,322 - +0.4 1,530,322 - -0.8 1,530,322 - +0.7 1,530,346 + +0.5 1,530,346 + -1.1 1,530,346 + -0.8 1,530,347 - +0.4 1,530,347 - +0.5 1,530,411 - +0.2 1,530,535 - -0.3 1,530,622 + EX28DRAFT_1517 0.22 -0.1 1,530,622 + EX28DRAFT_1517 0.22 -0.8 1,530,684 - EX28DRAFT_1517 0.31 +0.4 1,530,684 - EX28DRAFT_1517 0.31 -0.2 1,530,768 + EX28DRAFT_1517 0.43 +0.4 1,530,768 + EX28DRAFT_1517 0.43 +1.2 1,530,768 + EX28DRAFT_1517 0.43 +0.9 1,530,769 - EX28DRAFT_1517 0.43 -0.1 1,530,947 + EX28DRAFT_1517 0.68 +1.4 1,531,015 - EX28DRAFT_1517 0.78 +0.3 1,531,018 + EX28DRAFT_1517 0.79 -1.9 1,531,018 + EX28DRAFT_1517 0.79 -1.7 1,531,077 + EX28DRAFT_1517 0.87 +0.8 1,531,078 - EX28DRAFT_1517 0.87 -0.9 1,531,079 + EX28DRAFT_1517 0.87 +0.9 1,531,169 - +0.5 1,531,630 + EX28DRAFT_1518 0.39 -1.3 1,531,631 - EX28DRAFT_1518 0.39 -0.5 1,531,631 - EX28DRAFT_1518 0.39 -0.8 1,531,750 - EX28DRAFT_1518 0.49 +0.0 1,532,090 + EX28DRAFT_1518 0.77 -0.5 1,532,317 - +0.6 1,532,317 - +0.4 1,532,406 + -0.1 1,532,425 - -0.2 1,532,437 + +0.5 1,532,482 + -0.8 1,532,482 + -2.7 1,532,483 - +2.0 1,532,483 - -1.8 1,532,486 + +0.5 1,532,486 + -0.2 1,532,487 - -0.5 1,532,487 - -0.2 1,532,615 + EX28DRAFT_1519 0.15 +0.2 1,532,616 - EX28DRAFT_1519 0.15 -0.2
Or see this region's nucleotide sequence