Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1518

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1516 and EX28DRAFT_1517 are separated by 124 nucleotidesEX28DRAFT_1517 and EX28DRAFT_1518 overlap by 4 nucleotidesEX28DRAFT_1518 and EX28DRAFT_1519 are separated by 78 nucleotides EX28DRAFT_1516: EX28DRAFT_1516 - Outer membrane protein V, at 1,529,561 to 1,530,346 _1516 EX28DRAFT_1517: EX28DRAFT_1517 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,530,471 to 1,531,166 _1517 EX28DRAFT_1518: EX28DRAFT_1518 - Signal transduction histidine kinase, at 1,531,163 to 1,532,359 _1518 EX28DRAFT_1519: EX28DRAFT_1519 - RND family efflux transporter, MFP subunit, at 1,532,438 to 1,533,586 _1519 Position (kb) 1531 1532 1533Strain fitness (log2 ratio) -2 -1 0 1 2at 1530.320 kb on - strandat 1530.320 kb on - strandat 1530.320 kb on - strandat 1530.321 kb on + strandat 1530.321 kb on + strandat 1530.321 kb on + strandat 1530.321 kb on + strandat 1530.321 kb on + strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.346 kb on + strandat 1530.346 kb on + strandat 1530.346 kb on + strandat 1530.347 kb on - strandat 1530.347 kb on - strandat 1530.411 kb on - strandat 1530.535 kb on - strandat 1530.622 kb on + strand, within EX28DRAFT_1517at 1530.622 kb on + strand, within EX28DRAFT_1517at 1530.684 kb on - strand, within EX28DRAFT_1517at 1530.684 kb on - strand, within EX28DRAFT_1517at 1530.768 kb on + strand, within EX28DRAFT_1517at 1530.768 kb on + strand, within EX28DRAFT_1517at 1530.768 kb on + strand, within EX28DRAFT_1517at 1530.769 kb on - strand, within EX28DRAFT_1517at 1530.947 kb on + strand, within EX28DRAFT_1517at 1531.015 kb on - strand, within EX28DRAFT_1517at 1531.018 kb on + strand, within EX28DRAFT_1517at 1531.018 kb on + strand, within EX28DRAFT_1517at 1531.077 kb on + strand, within EX28DRAFT_1517at 1531.078 kb on - strand, within EX28DRAFT_1517at 1531.079 kb on + strand, within EX28DRAFT_1517at 1531.169 kb on - strandat 1531.630 kb on + strand, within EX28DRAFT_1518at 1531.631 kb on - strand, within EX28DRAFT_1518at 1531.631 kb on - strand, within EX28DRAFT_1518at 1531.750 kb on - strand, within EX28DRAFT_1518at 1532.090 kb on + strand, within EX28DRAFT_1518at 1532.317 kb on - strandat 1532.317 kb on - strandat 1532.406 kb on + strandat 1532.425 kb on - strandat 1532.437 kb on + strandat 1532.482 kb on + strandat 1532.482 kb on + strandat 1532.483 kb on - strandat 1532.483 kb on - strandat 1532.486 kb on + strandat 1532.486 kb on + strandat 1532.487 kb on - strandat 1532.487 kb on - strandat 1532.615 kb on + strand, within EX28DRAFT_1519at 1532.616 kb on - strand, within EX28DRAFT_1519

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,530,320 - -0.0
1,530,320 - -0.1
1,530,320 - +0.2
1,530,321 + +0.1
1,530,321 + -0.7
1,530,321 + -0.4
1,530,321 + -1.0
1,530,321 + +0.2
1,530,322 - +1.0
1,530,322 - -0.3
1,530,322 - +1.4
1,530,322 - -1.2
1,530,322 - +0.6
1,530,322 - +0.4
1,530,322 - -0.8
1,530,322 - +0.7
1,530,346 + +0.5
1,530,346 + -1.1
1,530,346 + -0.8
1,530,347 - +0.4
1,530,347 - +0.5
1,530,411 - +0.2
1,530,535 - -0.3
1,530,622 + EX28DRAFT_1517 0.22 -0.1
1,530,622 + EX28DRAFT_1517 0.22 -0.8
1,530,684 - EX28DRAFT_1517 0.31 +0.4
1,530,684 - EX28DRAFT_1517 0.31 -0.2
1,530,768 + EX28DRAFT_1517 0.43 +0.4
1,530,768 + EX28DRAFT_1517 0.43 +1.2
1,530,768 + EX28DRAFT_1517 0.43 +0.9
1,530,769 - EX28DRAFT_1517 0.43 -0.1
1,530,947 + EX28DRAFT_1517 0.68 +1.4
1,531,015 - EX28DRAFT_1517 0.78 +0.3
1,531,018 + EX28DRAFT_1517 0.79 -1.9
1,531,018 + EX28DRAFT_1517 0.79 -1.7
1,531,077 + EX28DRAFT_1517 0.87 +0.8
1,531,078 - EX28DRAFT_1517 0.87 -0.9
1,531,079 + EX28DRAFT_1517 0.87 +0.9
1,531,169 - +0.5
1,531,630 + EX28DRAFT_1518 0.39 -1.3
1,531,631 - EX28DRAFT_1518 0.39 -0.5
1,531,631 - EX28DRAFT_1518 0.39 -0.8
1,531,750 - EX28DRAFT_1518 0.49 +0.0
1,532,090 + EX28DRAFT_1518 0.77 -0.5
1,532,317 - +0.6
1,532,317 - +0.4
1,532,406 + -0.1
1,532,425 - -0.2
1,532,437 + +0.5
1,532,482 + -0.8
1,532,482 + -2.7
1,532,483 - +2.0
1,532,483 - -1.8
1,532,486 + +0.5
1,532,486 + -0.2
1,532,487 - -0.5
1,532,487 - -0.2
1,532,615 + EX28DRAFT_1519 0.15 +0.2
1,532,616 - EX28DRAFT_1519 0.15 -0.2

Or see this region's nucleotide sequence