Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1503 and EX28DRAFT_1504 are separated by 150 nucleotides EX28DRAFT_1504 and EX28DRAFT_1505 are separated by 159 nucleotides EX28DRAFT_1505 and EX28DRAFT_1506 are separated by 174 nucleotides
EX28DRAFT_1503: EX28DRAFT_1503 - 4-aminobutyrate aminotransferase, prokaryotic type, at 1,518,492 to 1,519,763
_1503
EX28DRAFT_1504: EX28DRAFT_1504 - Zn-dependent carboxypeptidase, at 1,519,914 to 1,521,401
_1504
EX28DRAFT_1505: EX28DRAFT_1505 - Thioredoxin-like domain, at 1,521,561 to 1,522,097
_1505
EX28DRAFT_1506: EX28DRAFT_1506 - Acid shock protein repeat, at 1,522,272 to 1,522,736
_1506
Position (kb)
1519
1520
1521
1522 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1518.915 kb on + strand, within EX28DRAFT_1503 at 1518.915 kb on + strand, within EX28DRAFT_1503 at 1518.915 kb on + strand, within EX28DRAFT_1503 at 1518.915 kb on + strand, within EX28DRAFT_1503 at 1518.916 kb on - strand, within EX28DRAFT_1503 at 1518.916 kb on - strand, within EX28DRAFT_1503 at 1518.917 kb on + strand, within EX28DRAFT_1503 at 1518.918 kb on - strand, within EX28DRAFT_1503 at 1518.954 kb on - strand, within EX28DRAFT_1503 at 1518.988 kb on - strand, within EX28DRAFT_1503 at 1519.381 kb on - strand, within EX28DRAFT_1503 at 1519.427 kb on + strand, within EX28DRAFT_1503 at 1519.427 kb on + strand, within EX28DRAFT_1503 at 1519.428 kb on - strand, within EX28DRAFT_1503 at 1519.428 kb on - strand, within EX28DRAFT_1503 at 1519.745 kb on + strand at 1519.762 kb on - strand at 1519.762 kb on - strand at 1519.762 kb on - strand at 1519.762 kb on - strand at 1519.824 kb on + strand at 1519.825 kb on - strand at 1519.873 kb on + strand at 1519.874 kb on - strand at 1520.662 kb on - strand, within EX28DRAFT_1504 at 1520.846 kb on + strand, within EX28DRAFT_1504 at 1520.943 kb on + strand, within EX28DRAFT_1504 at 1520.944 kb on - strand, within EX28DRAFT_1504 at 1520.944 kb on - strand, within EX28DRAFT_1504 at 1520.944 kb on - strand, within EX28DRAFT_1504 at 1520.944 kb on - strand, within EX28DRAFT_1504 at 1520.997 kb on + strand, within EX28DRAFT_1504 at 1521.119 kb on + strand, within EX28DRAFT_1504 at 1521.119 kb on + strand, within EX28DRAFT_1504 at 1521.169 kb on - strand, within EX28DRAFT_1504 at 1521.169 kb on - strand, within EX28DRAFT_1504 at 1521.186 kb on + strand, within EX28DRAFT_1504 at 1521.187 kb on - strand, within EX28DRAFT_1504 at 1521.328 kb on + strand at 1521.359 kb on + strand at 1521.360 kb on - strand at 1521.490 kb on + strand at 1521.490 kb on + strand at 1521.517 kb on + strand at 1521.518 kb on - strand at 1521.720 kb on - strand, within EX28DRAFT_1505 at 1521.753 kb on + strand, within EX28DRAFT_1505 at 1521.767 kb on - strand, within EX28DRAFT_1505 at 1521.786 kb on + strand, within EX28DRAFT_1505 at 1521.788 kb on + strand, within EX28DRAFT_1505 at 1521.788 kb on + strand, within EX28DRAFT_1505 at 1521.789 kb on - strand, within EX28DRAFT_1505 at 1521.860 kb on + strand, within EX28DRAFT_1505 at 1521.860 kb on + strand, within EX28DRAFT_1505 at 1522.052 kb on - strand at 1522.052 kb on - strand at 1522.095 kb on + strand at 1522.135 kb on + strand at 1522.136 kb on - strand at 1522.154 kb on + strand at 1522.212 kb on + strand at 1522.212 kb on + strand at 1522.213 kb on - strand at 1522.213 kb on - strand at 1522.213 kb on - strand at 1522.213 kb on - strand at 1522.213 kb on - strand at 1522.217 kb on - strand at 1522.277 kb on + strand at 1522.278 kb on - strand at 1522.282 kb on + strand at 1522.283 kb on - strand at 1522.285 kb on + strand at 1522.285 kb on + strand at 1522.286 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,518,915 + EX28DRAFT_1503 0.33 +0.5 1,518,915 + EX28DRAFT_1503 0.33 -0.5 1,518,915 + EX28DRAFT_1503 0.33 +1.5 1,518,915 + EX28DRAFT_1503 0.33 -0.1 1,518,916 - EX28DRAFT_1503 0.33 -0.3 1,518,916 - EX28DRAFT_1503 0.33 +0.2 1,518,917 + EX28DRAFT_1503 0.33 +1.0 1,518,918 - EX28DRAFT_1503 0.33 -0.2 1,518,954 - EX28DRAFT_1503 0.36 -0.2 1,518,988 - EX28DRAFT_1503 0.39 +0.2 1,519,381 - EX28DRAFT_1503 0.70 -0.3 1,519,427 + EX28DRAFT_1503 0.74 -0.0 1,519,427 + EX28DRAFT_1503 0.74 -1.0 1,519,428 - EX28DRAFT_1503 0.74 -0.4 1,519,428 - EX28DRAFT_1503 0.74 +0.4 1,519,745 + -1.0 1,519,762 - +0.5 1,519,762 - -0.2 1,519,762 - -1.0 1,519,762 - -0.0 1,519,824 + -2.9 1,519,825 - +0.4 1,519,873 + -0.4 1,519,874 - +0.8 1,520,662 - EX28DRAFT_1504 0.50 +0.8 1,520,846 + EX28DRAFT_1504 0.63 +0.0 1,520,943 + EX28DRAFT_1504 0.69 +0.5 1,520,944 - EX28DRAFT_1504 0.69 -0.4 1,520,944 - EX28DRAFT_1504 0.69 +1.8 1,520,944 - EX28DRAFT_1504 0.69 -0.1 1,520,944 - EX28DRAFT_1504 0.69 -0.9 1,520,997 + EX28DRAFT_1504 0.73 -2.1 1,521,119 + EX28DRAFT_1504 0.81 +0.2 1,521,119 + EX28DRAFT_1504 0.81 -0.4 1,521,169 - EX28DRAFT_1504 0.84 +1.0 1,521,169 - EX28DRAFT_1504 0.84 +0.3 1,521,186 + EX28DRAFT_1504 0.85 +0.4 1,521,187 - EX28DRAFT_1504 0.86 -0.3 1,521,328 + +0.6 1,521,359 + +0.2 1,521,360 - -1.3 1,521,490 + -0.8 1,521,490 + +0.3 1,521,517 + +0.7 1,521,518 - +1.6 1,521,720 - EX28DRAFT_1505 0.30 -0.4 1,521,753 + EX28DRAFT_1505 0.36 +0.3 1,521,767 - EX28DRAFT_1505 0.38 +0.4 1,521,786 + EX28DRAFT_1505 0.42 -0.7 1,521,788 + EX28DRAFT_1505 0.42 -0.2 1,521,788 + EX28DRAFT_1505 0.42 -0.7 1,521,789 - EX28DRAFT_1505 0.42 -3.1 1,521,860 + EX28DRAFT_1505 0.56 +0.5 1,521,860 + EX28DRAFT_1505 0.56 +0.1 1,522,052 - -0.3 1,522,052 - +0.2 1,522,095 + -0.2 1,522,135 + -0.4 1,522,136 - -0.7 1,522,154 + +1.8 1,522,212 + +0.4 1,522,212 + +0.2 1,522,213 - +0.9 1,522,213 - +0.2 1,522,213 - +0.6 1,522,213 - -0.0 1,522,213 - -0.4 1,522,217 - +0.2 1,522,277 + -0.3 1,522,278 - +0.8 1,522,282 + +0.5 1,522,283 - -0.6 1,522,285 + -1.3 1,522,285 + +0.0 1,522,286 - +0.6
Or see this region's nucleotide sequence