Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1495

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1494 and EX28DRAFT_1495 are separated by 121 nucleotidesEX28DRAFT_1495 and EX28DRAFT_1496 are separated by 63 nucleotides EX28DRAFT_1494: EX28DRAFT_1494 - Transcriptional regulator, at 1,508,440 to 1,509,372 _1494 EX28DRAFT_1495: EX28DRAFT_1495 - Arabinose efflux permease, at 1,509,494 to 1,510,747 _1495 EX28DRAFT_1496: EX28DRAFT_1496 - Amino acid transporters, at 1,510,811 to 1,512,202 _1496 Position (kb) 1509 1510 1511Strain fitness (log2 ratio) -3 -2 -1 0 1at 1508.497 kb on + strandat 1508.498 kb on - strandat 1508.674 kb on + strand, within EX28DRAFT_1494at 1508.675 kb on - strand, within EX28DRAFT_1494at 1508.675 kb on - strand, within EX28DRAFT_1494at 1508.675 kb on - strand, within EX28DRAFT_1494at 1508.675 kb on - strand, within EX28DRAFT_1494at 1508.675 kb on - strand, within EX28DRAFT_1494at 1508.757 kb on - strand, within EX28DRAFT_1494at 1508.757 kb on - strand, within EX28DRAFT_1494at 1509.110 kb on + strand, within EX28DRAFT_1494at 1509.110 kb on + strand, within EX28DRAFT_1494at 1509.111 kb on - strand, within EX28DRAFT_1494at 1509.111 kb on - strand, within EX28DRAFT_1494at 1509.345 kb on - strandat 1509.479 kb on - strandat 1509.535 kb on + strandat 1509.599 kb on - strandat 1509.719 kb on - strand, within EX28DRAFT_1495at 1509.730 kb on + strand, within EX28DRAFT_1495at 1509.730 kb on + strand, within EX28DRAFT_1495at 1509.730 kb on + strand, within EX28DRAFT_1495at 1509.730 kb on + strand, within EX28DRAFT_1495at 1509.730 kb on + strand, within EX28DRAFT_1495at 1509.730 kb on + strand, within EX28DRAFT_1495at 1509.731 kb on - strand, within EX28DRAFT_1495at 1509.731 kb on - strand, within EX28DRAFT_1495at 1509.732 kb on + strand, within EX28DRAFT_1495at 1509.732 kb on + strand, within EX28DRAFT_1495at 1509.733 kb on - strand, within EX28DRAFT_1495at 1509.733 kb on - strand, within EX28DRAFT_1495at 1509.838 kb on + strand, within EX28DRAFT_1495at 1509.839 kb on - strand, within EX28DRAFT_1495at 1509.839 kb on - strand, within EX28DRAFT_1495at 1509.874 kb on + strand, within EX28DRAFT_1495at 1509.874 kb on + strand, within EX28DRAFT_1495at 1509.938 kb on + strand, within EX28DRAFT_1495at 1509.938 kb on + strand, within EX28DRAFT_1495at 1509.989 kb on + strand, within EX28DRAFT_1495at 1510.057 kb on + strand, within EX28DRAFT_1495at 1510.125 kb on + strand, within EX28DRAFT_1495at 1510.270 kb on + strand, within EX28DRAFT_1495at 1510.270 kb on + strand, within EX28DRAFT_1495at 1510.270 kb on + strand, within EX28DRAFT_1495at 1510.270 kb on + strand, within EX28DRAFT_1495at 1510.271 kb on - strand, within EX28DRAFT_1495at 1510.271 kb on - strand, within EX28DRAFT_1495at 1510.274 kb on + strand, within EX28DRAFT_1495at 1510.275 kb on - strand, within EX28DRAFT_1495at 1510.275 kb on - strand, within EX28DRAFT_1495at 1510.275 kb on - strand, within EX28DRAFT_1495at 1510.278 kb on + strand, within EX28DRAFT_1495at 1510.278 kb on + strand, within EX28DRAFT_1495at 1510.278 kb on + strand, within EX28DRAFT_1495at 1510.279 kb on - strand, within EX28DRAFT_1495at 1510.279 kb on - strand, within EX28DRAFT_1495at 1510.279 kb on - strand, within EX28DRAFT_1495at 1510.346 kb on + strand, within EX28DRAFT_1495at 1510.346 kb on + strand, within EX28DRAFT_1495at 1510.440 kb on + strand, within EX28DRAFT_1495at 1510.441 kb on - strand, within EX28DRAFT_1495at 1510.441 kb on - strand, within EX28DRAFT_1495at 1510.600 kb on + strand, within EX28DRAFT_1495at 1510.601 kb on - strand, within EX28DRAFT_1495at 1510.601 kb on - strand, within EX28DRAFT_1495at 1510.604 kb on + strand, within EX28DRAFT_1495at 1510.604 kb on + strand, within EX28DRAFT_1495at 1510.607 kb on + strand, within EX28DRAFT_1495at 1510.655 kb on - strandat 1510.658 kb on + strandat 1510.659 kb on - strandat 1510.659 kb on - strandat 1510.659 kb on - strandat 1510.659 kb on - strandat 1510.659 kb on - strandat 1510.749 kb on - strandat 1511.058 kb on + strand, within EX28DRAFT_1496at 1511.059 kb on - strand, within EX28DRAFT_1496at 1511.059 kb on - strand, within EX28DRAFT_1496at 1511.072 kb on - strand, within EX28DRAFT_1496at 1511.081 kb on - strand, within EX28DRAFT_1496at 1511.157 kb on - strand, within EX28DRAFT_1496at 1511.168 kb on - strand, within EX28DRAFT_1496at 1511.253 kb on + strand, within EX28DRAFT_1496at 1511.253 kb on + strand, within EX28DRAFT_1496at 1511.303 kb on - strand, within EX28DRAFT_1496at 1511.303 kb on - strand, within EX28DRAFT_1496at 1511.306 kb on + strand, within EX28DRAFT_1496at 1511.355 kb on + strand, within EX28DRAFT_1496at 1511.581 kb on + strand, within EX28DRAFT_1496at 1511.582 kb on - strand, within EX28DRAFT_1496at 1511.582 kb on - strand, within EX28DRAFT_1496at 1511.696 kb on - strand, within EX28DRAFT_1496at 1511.744 kb on - strand, within EX28DRAFT_1496

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,508,497 + -0.2
1,508,498 - -0.4
1,508,674 + EX28DRAFT_1494 0.25 -0.4
1,508,675 - EX28DRAFT_1494 0.25 -1.5
1,508,675 - EX28DRAFT_1494 0.25 +0.4
1,508,675 - EX28DRAFT_1494 0.25 -0.3
1,508,675 - EX28DRAFT_1494 0.25 +1.5
1,508,675 - EX28DRAFT_1494 0.25 +0.3
1,508,757 - EX28DRAFT_1494 0.34 +0.8
1,508,757 - EX28DRAFT_1494 0.34 -0.2
1,509,110 + EX28DRAFT_1494 0.72 +0.6
1,509,110 + EX28DRAFT_1494 0.72 +1.5
1,509,111 - EX28DRAFT_1494 0.72 -1.2
1,509,111 - EX28DRAFT_1494 0.72 +0.6
1,509,345 - -0.3
1,509,479 - -1.7
1,509,535 + +0.5
1,509,599 - +0.8
1,509,719 - EX28DRAFT_1495 0.18 +0.9
1,509,730 + EX28DRAFT_1495 0.19 +0.6
1,509,730 + EX28DRAFT_1495 0.19 +0.9
1,509,730 + EX28DRAFT_1495 0.19 +0.3
1,509,730 + EX28DRAFT_1495 0.19 +1.3
1,509,730 + EX28DRAFT_1495 0.19 +0.2
1,509,730 + EX28DRAFT_1495 0.19 -0.3
1,509,731 - EX28DRAFT_1495 0.19 -0.7
1,509,731 - EX28DRAFT_1495 0.19 -1.0
1,509,732 + EX28DRAFT_1495 0.19 -0.2
1,509,732 + EX28DRAFT_1495 0.19 +0.1
1,509,733 - EX28DRAFT_1495 0.19 +0.8
1,509,733 - EX28DRAFT_1495 0.19 +0.0
1,509,838 + EX28DRAFT_1495 0.27 +0.1
1,509,839 - EX28DRAFT_1495 0.28 +0.0
1,509,839 - EX28DRAFT_1495 0.28 -0.1
1,509,874 + EX28DRAFT_1495 0.30 +0.0
1,509,874 + EX28DRAFT_1495 0.30 +0.7
1,509,938 + EX28DRAFT_1495 0.35 +0.5
1,509,938 + EX28DRAFT_1495 0.35 +0.7
1,509,989 + EX28DRAFT_1495 0.39 -0.1
1,510,057 + EX28DRAFT_1495 0.45 +0.6
1,510,125 + EX28DRAFT_1495 0.50 +0.4
1,510,270 + EX28DRAFT_1495 0.62 +0.6
1,510,270 + EX28DRAFT_1495 0.62 +0.1
1,510,270 + EX28DRAFT_1495 0.62 +0.3
1,510,270 + EX28DRAFT_1495 0.62 -2.7
1,510,271 - EX28DRAFT_1495 0.62 -0.1
1,510,271 - EX28DRAFT_1495 0.62 -0.3
1,510,274 + EX28DRAFT_1495 0.62 +0.3
1,510,275 - EX28DRAFT_1495 0.62 +0.3
1,510,275 - EX28DRAFT_1495 0.62 -0.0
1,510,275 - EX28DRAFT_1495 0.62 +0.6
1,510,278 + EX28DRAFT_1495 0.63 -0.5
1,510,278 + EX28DRAFT_1495 0.63 -0.1
1,510,278 + EX28DRAFT_1495 0.63 +0.3
1,510,279 - EX28DRAFT_1495 0.63 +0.5
1,510,279 - EX28DRAFT_1495 0.63 +0.6
1,510,279 - EX28DRAFT_1495 0.63 +1.7
1,510,346 + EX28DRAFT_1495 0.68 +0.4
1,510,346 + EX28DRAFT_1495 0.68 +0.5
1,510,440 + EX28DRAFT_1495 0.75 -0.2
1,510,441 - EX28DRAFT_1495 0.76 +0.0
1,510,441 - EX28DRAFT_1495 0.76 -0.2
1,510,600 + EX28DRAFT_1495 0.88 +0.0
1,510,601 - EX28DRAFT_1495 0.88 +0.3
1,510,601 - EX28DRAFT_1495 0.88 +1.7
1,510,604 + EX28DRAFT_1495 0.89 +0.5
1,510,604 + EX28DRAFT_1495 0.89 +0.1
1,510,607 + EX28DRAFT_1495 0.89 +0.1
1,510,655 - -0.5
1,510,658 + -0.6
1,510,659 - -0.3
1,510,659 - +0.0
1,510,659 - +0.6
1,510,659 - +1.3
1,510,659 - +0.3
1,510,749 - -0.1
1,511,058 + EX28DRAFT_1496 0.18 -0.2
1,511,059 - EX28DRAFT_1496 0.18 -0.0
1,511,059 - EX28DRAFT_1496 0.18 +0.3
1,511,072 - EX28DRAFT_1496 0.19 +0.2
1,511,081 - EX28DRAFT_1496 0.19 -3.3
1,511,157 - EX28DRAFT_1496 0.25 +0.5
1,511,168 - EX28DRAFT_1496 0.26 -0.7
1,511,253 + EX28DRAFT_1496 0.32 -0.1
1,511,253 + EX28DRAFT_1496 0.32 +0.8
1,511,303 - EX28DRAFT_1496 0.35 +0.1
1,511,303 - EX28DRAFT_1496 0.35 -0.2
1,511,306 + EX28DRAFT_1496 0.36 +0.3
1,511,355 + EX28DRAFT_1496 0.39 -0.1
1,511,581 + EX28DRAFT_1496 0.55 -0.4
1,511,582 - EX28DRAFT_1496 0.55 -0.2
1,511,582 - EX28DRAFT_1496 0.55 -1.3
1,511,696 - EX28DRAFT_1496 0.64 -0.6
1,511,744 - EX28DRAFT_1496 0.67 -1.0

Or see this region's nucleotide sequence