Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1486 and EX28DRAFT_1487 are separated by 276 nucleotides EX28DRAFT_1487 and EX28DRAFT_1488 are separated by 18 nucleotides EX28DRAFT_1488 and EX28DRAFT_1489 are separated by 8 nucleotides
EX28DRAFT_1486: EX28DRAFT_1486 - Predicted membrane protein, at 1,500,451 to 1,501,242
_1486
EX28DRAFT_1487: EX28DRAFT_1487 - ABC-type proline/glycine betaine transport systems, permease component, at 1,501,519 to 1,502,229
_1487
EX28DRAFT_1488: EX28DRAFT_1488 - Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein), at 1,502,248 to 1,503,147
_1488
EX28DRAFT_1489: EX28DRAFT_1489 - ABC-type proline/glycine betaine transport systems, permease component, at 1,503,156 to 1,503,803
_1489
Position (kb)
1501
1502
1503 Strain fitness (log2 ratio)
-2
-1
0
1 at 1500.538 kb on - strand, within EX28DRAFT_1486 at 1500.691 kb on - strand, within EX28DRAFT_1486 at 1500.752 kb on + strand, within EX28DRAFT_1486 at 1500.752 kb on + strand, within EX28DRAFT_1486 at 1500.752 kb on + strand, within EX28DRAFT_1486 at 1500.752 kb on + strand, within EX28DRAFT_1486 at 1500.753 kb on - strand, within EX28DRAFT_1486 at 1500.838 kb on + strand, within EX28DRAFT_1486 at 1500.839 kb on - strand, within EX28DRAFT_1486 at 1500.839 kb on - strand, within EX28DRAFT_1486 at 1500.847 kb on + strand, within EX28DRAFT_1486 at 1500.848 kb on - strand, within EX28DRAFT_1486 at 1500.990 kb on - strand, within EX28DRAFT_1486 at 1501.030 kb on + strand, within EX28DRAFT_1486 at 1501.030 kb on + strand, within EX28DRAFT_1486 at 1501.077 kb on - strand, within EX28DRAFT_1486 at 1501.238 kb on + strand at 1501.247 kb on - strand at 1501.310 kb on + strand at 1501.343 kb on + strand at 1501.443 kb on - strand at 1501.443 kb on - strand at 1501.490 kb on - strand at 1501.530 kb on - strand at 1501.564 kb on - strand at 1501.636 kb on + strand, within EX28DRAFT_1487 at 1501.750 kb on + strand, within EX28DRAFT_1487 at 1501.751 kb on - strand, within EX28DRAFT_1487 at 1501.895 kb on - strand, within EX28DRAFT_1487 at 1502.233 kb on + strand at 1502.247 kb on + strand at 1502.248 kb on - strand at 1502.483 kb on - strand, within EX28DRAFT_1488 at 1502.613 kb on + strand, within EX28DRAFT_1488 at 1502.613 kb on + strand, within EX28DRAFT_1488 at 1502.613 kb on + strand, within EX28DRAFT_1488 at 1502.613 kb on + strand, within EX28DRAFT_1488 at 1502.614 kb on - strand, within EX28DRAFT_1488 at 1502.659 kb on - strand, within EX28DRAFT_1488 at 1502.703 kb on + strand, within EX28DRAFT_1488 at 1502.845 kb on + strand, within EX28DRAFT_1488 at 1502.846 kb on - strand, within EX28DRAFT_1488 at 1502.848 kb on - strand, within EX28DRAFT_1488 at 1502.887 kb on + strand, within EX28DRAFT_1488 at 1503.171 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,500,538 - EX28DRAFT_1486 0.11 +0.6 1,500,691 - EX28DRAFT_1486 0.30 +0.2 1,500,752 + EX28DRAFT_1486 0.38 -0.1 1,500,752 + EX28DRAFT_1486 0.38 -0.1 1,500,752 + EX28DRAFT_1486 0.38 +0.2 1,500,752 + EX28DRAFT_1486 0.38 +0.7 1,500,753 - EX28DRAFT_1486 0.38 +0.0 1,500,838 + EX28DRAFT_1486 0.49 -0.1 1,500,839 - EX28DRAFT_1486 0.49 -0.2 1,500,839 - EX28DRAFT_1486 0.49 -0.6 1,500,847 + EX28DRAFT_1486 0.50 -1.1 1,500,848 - EX28DRAFT_1486 0.50 +0.7 1,500,990 - EX28DRAFT_1486 0.68 -0.3 1,501,030 + EX28DRAFT_1486 0.73 +1.3 1,501,030 + EX28DRAFT_1486 0.73 -0.3 1,501,077 - EX28DRAFT_1486 0.79 +0.1 1,501,238 + -1.3 1,501,247 - +0.3 1,501,310 + +0.4 1,501,343 + -0.4 1,501,443 - -0.8 1,501,443 - +0.6 1,501,490 - -1.9 1,501,530 - +0.0 1,501,564 - +0.3 1,501,636 + EX28DRAFT_1487 0.16 +0.1 1,501,750 + EX28DRAFT_1487 0.32 -0.1 1,501,751 - EX28DRAFT_1487 0.33 -0.2 1,501,895 - EX28DRAFT_1487 0.53 +1.7 1,502,233 + -0.0 1,502,247 + +0.0 1,502,248 - -1.5 1,502,483 - EX28DRAFT_1488 0.26 +0.0 1,502,613 + EX28DRAFT_1488 0.41 -1.1 1,502,613 + EX28DRAFT_1488 0.41 -0.0 1,502,613 + EX28DRAFT_1488 0.41 -0.3 1,502,613 + EX28DRAFT_1488 0.41 +0.7 1,502,614 - EX28DRAFT_1488 0.41 -0.3 1,502,659 - EX28DRAFT_1488 0.46 +0.5 1,502,703 + EX28DRAFT_1488 0.51 +1.2 1,502,845 + EX28DRAFT_1488 0.66 -0.2 1,502,846 - EX28DRAFT_1488 0.66 -0.3 1,502,848 - EX28DRAFT_1488 0.67 -0.1 1,502,887 + EX28DRAFT_1488 0.71 +0.5 1,503,171 + -0.6
Or see this region's nucleotide sequence